KEGG   Pandoraea vervacti: UC34_08075
Entry
UC34_08075        CDS       T03688                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pve  Pandoraea vervacti
Pathway
pve02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pve00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    UC34_08075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pve03021]
    UC34_08075
Transcription machinery [BR:pve03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     UC34_08075
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF PhyR_sigma-like HTH_23 HTH_7 HTH_29 HTH_24 GerE HTH_Tnp_4 HTH_IclR HTH_Crp_2 HTH_10 HTH_40 DUF2089
Other DBs
NCBI-ProteinID: AJP56961
UniProt: A0ABN4FPB2
LinkDB
Position
complement(1789432..1789950)
AA seq 172 aa
MQTPGPLPSTVELLYCHHHSWLKGWLHRRLGSAEQAADIAHDTFVRLLGSERVPSTFDEP
RAYLTTVAQNLVSNHWRRQKLERAYLDALAQVPRGVEWSPETRAMMLETLLELDRLLDGL
PPLVRQAFLSSQLDGQTHAQIAQTLGVSLPTVKRYLAKALHRCYFADLSFLG
NT seq 519 nt   +upstreamnt  +downstreamnt
atgcaaaccccgggcccccttccctctaccgtcgaactgctttattgccatcaccattcc
tggctaaagggctggctgcatcgacggcttggcagtgccgagcaggcagcggacatcgcc
cacgacactttcgtgcgactgcttggcagcgagcgcgtgccgtcgacattcgacgaacct
cgcgcctatctcacgacggtagcgcagaatctcgtctctaatcactggcgtcgtcagaag
ctcgaacgggcttacctcgatgcgctcgcgcaagtgcctcgcggcgtggaatggtcgccc
gagacgcgcgccatgatgctggaaacactgctggagctcgatcggctgctcgacggcctg
ccgccccttgtccgtcaggcgtttttgtcctcgcaactggacgggcaaacacacgcacag
atcgcgcagacgctcggtgtctcgctaccaacggtcaaacgctatctcgccaaggcactg
caccgctgctacttcgccgacctgtcgtttctaggctga

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