Pandoraea vervacti: UC34_08075
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Entry
UC34_08075 CDS
T03688
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pve
Pandoraea vervacti
Pathway
pve02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
UC34_08075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pve03021
]
UC34_08075
Transcription machinery [BR:
pve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UC34_08075
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
HTH_7
HTH_29
HTH_24
GerE
HTH_Tnp_4
HTH_IclR
HTH_Crp_2
HTH_10
HTH_40
DUF2089
Motif
Other DBs
NCBI-ProteinID:
AJP56961
UniProt:
A0ABN4FPB2
LinkDB
All DBs
Position
complement(1789432..1789950)
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AA seq
172 aa
AA seq
DB search
MQTPGPLPSTVELLYCHHHSWLKGWLHRRLGSAEQAADIAHDTFVRLLGSERVPSTFDEP
RAYLTTVAQNLVSNHWRRQKLERAYLDALAQVPRGVEWSPETRAMMLETLLELDRLLDGL
PPLVRQAFLSSQLDGQTHAQIAQTLGVSLPTVKRYLAKALHRCYFADLSFLG
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccccgggcccccttccctctaccgtcgaactgctttattgccatcaccattcc
tggctaaagggctggctgcatcgacggcttggcagtgccgagcaggcagcggacatcgcc
cacgacactttcgtgcgactgcttggcagcgagcgcgtgccgtcgacattcgacgaacct
cgcgcctatctcacgacggtagcgcagaatctcgtctctaatcactggcgtcgtcagaag
ctcgaacgggcttacctcgatgcgctcgcgcaagtgcctcgcggcgtggaatggtcgccc
gagacgcgcgccatgatgctggaaacactgctggagctcgatcggctgctcgacggcctg
ccgccccttgtccgtcaggcgtttttgtcctcgcaactggacgggcaaacacacgcacag
atcgcgcagacgctcggtgtctcgctaccaacggtcaaacgctatctcgccaaggcactg
caccgctgctacttcgccgacctgtcgtttctaggctga
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integrated database retrieval system