Pandoraea vervacti: UC34_09670
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Entry
UC34_09670 CDS
T03688
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pve
Pandoraea vervacti
Pathway
pve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UC34_09670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pve03021
]
UC34_09670
03019 Messenger RNA biogenesis [BR:
pve03019
]
UC34_09670
Transcription machinery [BR:
pve03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UC34_09670
Messenger RNA biogenesis [BR:
pve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UC34_09670
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AJP57199
UniProt:
A0ABM5SXG1
LinkDB
All DBs
Position
complement(2129538..2130800)
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSQHVSELLEMANGLEIENANRLRKQELMFAILKKRAKSGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GHPPEASKHKIMFENLTPLHPNKPLLLERDIRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAITANHPEAKLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHV
QVAEMVIEKAKRLIEMKEDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKLIYDMDEAEAMEFLLGKIKQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgaactaaagtcccagcacgtctccgagctgctagaaatggcgaacggt
ctcgaaatcgagaacgccaaccgtcttcgcaagcaggagctgatgttcgccattctgaag
aagcgcgcaaagtccggcgaaaccatctttggcgacggtacgctcgaagtgctgccggac
ggcttcggtttcctgcgctcgcctgaaacgtcgtatctggccagcacggacgacatctat
atcagcccgtcgcagatccgccgcttcaacctgcataccggcgacacgatcgaaggggaa
gtgcgtacgccgaaggacggcgagcgttatttcgcgctggtgaaggtcgacaaagtcaac
ggtcacccgcccgaggcctcgaaacataagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgctgctcgagcgcgacattcgcggcgaagaaaacgtgacgggccgc
atcatcgacatgatcgccccgatcggcaagggccagcgcggtctgctggtcgcctcgccc
aagtccggcaagacggtgatgttgcagcacattgcgcacgccatcacggccaaccacccg
gaagccaagctcttcgtgctgctcatcgacgagcgtccggaagaagtgacggaaatgcag
cgctcggtgcgcggcgaagtcatcgcgtcgacgttcgacgaaccggcaacgcgtcacgtt
caggtcgcggaaatggtgatcgagaaggccaagcgcctgatcgaaatgaaggaagacgtg
gtcattctgctcgactcgatcacgcgtctggcccgcgcctacaacaccgtgatcccggca
tcgggcaaagtgctcaccggcggggtcgacgccaacgccctgcaacgtccgaagcgtttc
ttcggtgcggcgcgtaacgtcgaagaaggcggctcgctcacgatcatcgctacggcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagaattcaagggcacgggcaac
atggaagtgcacctggagcgtcgcctcgcggaaaagcgcgtctatccgtcgatcaacctg
aacaagtcgggcacgcgccgcgaagagttgctcatcaagccggaaatcctccagaagatc
tgggtgctgcgcaagctcatctacgatatggacgaggccgaagccatggaattcctgctt
ggcaagatcaagcagacgaagaacaacgccgagttcttcgacctgatgcgccgcggcggc
tga
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