Pandoraea vervacti: UC34_14245
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Entry
UC34_14245 CDS
T03688
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pve
Pandoraea vervacti
Pathway
pve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UC34_14245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pve03400
]
UC34_14245
Enzymes [BR:
pve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UC34_14245
DNA repair and recombination proteins [BR:
pve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UC34_14245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
Glyco_tran_WecG
AAA_30
Cas3-like_C_2
AAA_25
AroM
Motif
Other DBs
NCBI-ProteinID:
AJP57826
LinkDB
All DBs
Position
3236133..3239597
Genome browser
AA seq
1154 aa
AA seq
DB search
MPSANALSRSTVPVPLVKAGQRYAFAGSHASSDALLIARYFEENRERLPLLAVVCAQATD
ALRLQQELKWCAPELRVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEKRCDIVLVPA
TTALYRMAPASFMAAYTFFFTQGERLDEARLKSQLTLAGYEHVSQVMRPGEYCVRGGLID
LYPMGSALPYRLDLFDDTIDSIRAFDPDTQRSLYPVKEVRLLPGREFPFDEAARTAFRGR
WREVFEGDPSRSPIYKDIGSGVPSAGIEYYLPLFFEETATLFHYLPEDAQLVFVGDLDAA
ISRFWNDTRQRYNFLSHDRERPVLPPEQLFLLDQDFFAIAKPFARLTLPTPGDGSWAMAL
PPLAINRRADDPLAALRAYLARTPARVLLCADSAGRRETLLQLLHDNDLRPASVESLEDF
LTSDKRFCIGVAPLAAGFLLPTEDLAFVTENELYEGLARRAGKRRQEQATSVDSMVRDLA
ELKIGDPVVHSQHGIGRYHGLVSMDLGEGETEFLHLEYSGDSKLYVPVSQLHLISRYSGS
DPDTAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRAARSGYAFELSPRDYEKFAD
SFGFEETPDQAAAIAAVMSDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVLDGKQVAIL
APTTLLAEQHAQTFSDRFAEWPVRIAELSRFKTTKEVNASVKAINEGQVDIVIGTHKLLS
NDIQFQRLGLVIIDEEHRFGVRQKEALKALRAEVDMLTLTATPIPRTLGMALEGLRDFSV
IATAPQKRLAIKTFVRREEDGVIREAMLRELKRGGQVYFLHNEVETIENRKAQLEALVPE
ARIVVAHGQMHERDLERVMRDFVTQRANVLLCTTIIETGIDVPTANTILMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDPKSLTKQAQRRLEAIQQMEELGAGFYLAMHDLEIRGA
GEVLGDKQSGEIHEIGFQLYTDMLADAVSALKAGREPDLTAPLAATTEINLHVPAILPSD
YCGDVQERLSLYKRLANGTHTDAIDTIQEELVDRFGKLPQQAQALIETHRLRLLAKPLGI
IKIDASEDAVALQFEPTPAVDPMRIIELVQKHRHIKLAGQDKLRIEARHAQLTDRVRAIK
ETLRALGSPGAKAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccctccgccaacgccttatcccgtagtaccgtgcctgtgccgctcgtgaaagcggga
cagcgttacgcttttgccggctcgcacgcatcgagcgacgccctgctcatcgcccgctac
ttcgaggaaaatcgcgagcgcctgccgctgctcgccgtcgtgtgcgcgcaagccaccgac
gcgctgcgtctgcagcaggagctcaagtggtgcgcgcccgagttgcgcgtgcgtctgctc
cccgactgggaaacgctcccttacgacaccttctcgccacatcaggacctggtctccgag
cgtctcgccacgctgcacgatctaggcgagaagcgctgcgacatcgtgctggtgcccgcc
accaccgcgctttaccgcatggcgccggcaagcttcatggcggcctacacgttcttcttc
acgcaaggagaacggctcgacgaagcgcgtctgaagtcgcaattgacgctcgccggctac
gagcatgtcagtcaggtgatgcgcccgggcgagtattgcgtgcgcggtgggctgatcgac
ctctatccgatgggctccgccctgccttatcgcctggatttgttcgacgacacgatcgac
agcattcgcgcgttcgaccccgatacccagcgcagtctctatccggtcaaggaagtgcgt
ctgctcccgggccgcgaattcccgtttgacgaagccgcccgcacggcctttcgcggccgc
tggcgcgaagtcttcgaaggcgacccgagccggagtccgatctacaaggacattggcagc
ggcgtgccctccgcgggcatcgagtactacctgccgctgttcttcgaagagaccgccacg
ctcttccactatctgcccgaagacgcgcaactcgtgttcgtcggcgatctcgacgcagcc
atcagccgcttctggaacgacacgcgccagcgatacaacttcctctcgcacgaccgcgag
cgcccggtattgccgccggagcaactgttcctgctcgatcaggatttcttcgcgattgcc
aagccgttcgcgcgcctgacgctgcccacaccgggggacggcagctgggcgatggccttg
ccgccgctcgcgatcaaccgtcgcgccgacgatccgctcgccgcgctgcgcgcgtatctt
gcccgcacgcccgcccgcgtcctgctgtgcgccgactcggcgggccgtcgcgagacgctg
ctgcaactgctgcatgacaacgatctgcggcccgcgagcgtcgaatcgctggaagatttc
ctgacgtcggacaagcgcttttgcatcggcgtcgccccgcttgcggcggggttcctgctg
cccacggaagacctcgcattcgttaccgagaacgagctttacgaaggcctggcgcgtcgc
gcgggcaagcgtcgccaggaacaggcgacctccgtcgactcgatggtgcgcgatctcgcc
gaactgaagatcggcgacccggtcgtgcacagccagcatgggatcggccgttatcacggg
ctcgtcagcatggatctgggcgaaggcgagacggaattcctgcacctcgaatactcgggc
gacagcaagctgtatgtgccggtctcgcaattgcatctgatctcgcgctacagcggctcg
gaccccgacaccgccccgctgcactcgttgggctccggtcagtgggagaaggccaaacgc
aaggccgcgcaacagattcgcgacacggcggccgagttgctcaatctctatgcgcgccgc
gccgcacgatcgggctacgcgttcgagctctcgccgcgcgactacgagaagttcgcagac
agcttcggtttcgaggaaacgccggatcaggccgccgccatcgccgccgtgatgagcgat
atgacgagcggccgccccatggaccgtctggtctgtggcgacgttggtttcggcaagacg
gaagtggcgttgcgcgccgccttcattgccgtgctcgacggcaagcaggtcgccattctc
gcgccgacgacgctgctcgccgagcagcacgcgcagaccttctccgaccgcttcgccgaa
tggcccgtgcgcattgccgaactctcgcgtttcaagaccacgaaggaagtgaatgcgagc
gtaaaagccatcaacgaaggtcaggtcgacattgtgatcggcacgcacaagctgctctcg
aacgacattcagttccagcggctcggcctcgtgatcatcgatgaagaacatcgcttcggc
gtgcgtcagaaggaagcgctcaaggcgttgcgcgccgaagtggacatgctcacgctcacc
gccacgccgatcccgcgcacgctgggcatggcgctcgaaggcctgcgagacttctcggtc
atcgccaccgcgccgcagaagcggctggcgatcaagacgttcgtgcgccgcgaggaagac
ggcgtgatccgcgaagcgatgctgcgcgagctcaagcgcggcgggcaggtgtacttcctg
cacaacgaagtcgagaccatcgagaaccgcaaggctcaactcgaagcgctcgtaccggaa
gcgcgcatcgtggtcgcccacggccagatgcacgaacgcgatctggagcgcgtgatgcgc
gacttcgtcactcagcgcgcgaacgtgctgctgtgtacgaccatcatcgagacggggatc
gacgtgccgacggccaacacgatcctgatgcatcgcgcggacaagttcggtcttgcccag
ttgcaccagcttcgcggacgcgtgggccggtcgcaccaccaggcctatgcctatctgctc
gtgcacgatccgaaatcgctcaccaaacaagcgcagcgacgcctggaagccatccagcaa
atggaagaactgggcgccggcttctatctggcgatgcacgatctggaaattcgcggtgcc
ggtgaagtgctgggcgacaagcaatcgggcgagatccacgaaatcggcttccagctttac
accgacatgctggccgatgccgtgagcgcgctcaaggccggtcgggaacccgacctcacc
gcgccgctggccgcgacgacggaaatcaatctacacgtccccgcgatcctgccgagcgat
tactgcggcgacgtgcaggagcgtctctcgctatacaagcggctggccaacggcacgcac
acggacgccatcgacacgattcaggaagagcttgtcgaccgcttcgggaagctgccgcag
caggcacaggcgctcatcgagacacaccgcctgcgtctgctggccaaaccgctgggcatc
atcaagatcgacgccagcgaagacgccgtggcattgcaattcgagccgacgcccgccgtc
gacccgatgcgcatcatcgagctcgtacagaaacatcgccatatcaagctcgccgggcag
gacaagctgcgcatcgaagccaggcacgcgcaactgaccgaccgtgtgcgcgccatcaag
gagaccctgcgcgccctggggtcgcccggcgcgaaggcggcatga
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