Pandoraea vervacti: UC34_18930
Help
Entry
UC34_18930 CDS
T03688
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pve
Pandoraea vervacti
Pathway
pve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UC34_18930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pve03019
]
UC34_18930
Enzymes [BR:
pve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UC34_18930
Messenger RNA biogenesis [BR:
pve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UC34_18930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
HEM4
AAA_22
Utp25_C
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AJP58468
LinkDB
All DBs
Position
complement(4360579..4362066)
Genome browser
AA seq
495 aa
AA seq
DB search
MADVNAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPDANTSASPARHPVRALILTPTRELADQVADNVRLYATHTPLRNTVV
FGGVDMNPQKDALRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNEIKKLASSYLTNPVTIEVARRNATADTVEQVVYEVDE
DDKRAAVVQILNERDLKQVIVFVNSKIGASRLARQLERDGVVTAAIHGDKSQNERMQALE
AFKQGNIRALVATDVAARGLDISDLPGVINYDLPYNAEDYVHRIGRTGRAGASGVALSLC
APDERKQLVEIEKLIKRELKRGQMALERRSRSRDDRGDRYERGDRAERGERSERHGRSDG
LRVGRSGGASMPRRVRPEDEFFYKPYEPSPTASESQRDTRASLDAGVPGAFGAPSEKAPK
RQVAALLAGFPRKAG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaaatgctgttccgacccccggcttcgatagctttgggctgcatgcggac
atcttgcgcgccattgccgagcagggctacacccagccgacgccgattcaggcacaggcc
attccggtcgtgctgtccggtcgcgatgtcatgggtgccgcgcaaacggggaccggcaag
accgccagcttctcgctgccgatcattcagcgcctgctgcccgacgccaatacgagtgca
tcgcccgcgcgccacccggtgcgtgcgctgatcctcacgccgacgcgcgaactcgccgac
caggttgccgacaacgtgcgtctgtatgcgacccacacgccgctgcgcaacacggtggtg
ttcgggggcgtcgacatgaatccgcagaaggatgccctgcgacgcggcgtcgagattctc
atcgccacgccgggtcgtctgctcgatcacgtcgagcagaagacggtgaacctgagccag
gtcaagatgctggtgctcgacgaagccgaccgcatgctggacatgggcttcctgcccgat
cttcagagaattctgaatctgctgcccaagcagcgtcagacgctgctgttctcggcaacg
ttttcgaacgaaatcaagaagctcgcatcgagctacctcacgaacccggtcacgatcgaa
gtggcgcgtcgcaatgcgacggccgatacggtcgagcaggtcgtctacgaagtggatgaa
gacgacaagcgtgctgccgtggtccagattcttaacgagcgcgatctcaagcaggtcatc
gtgttcgtcaacagcaagattggtgctagccgtctggcacgccagttggagcgcgacggt
gtcgtgacggccgccattcacggcgacaagtcgcagaacgagcgcatgcaggcgcttgaa
gcgttcaagcaaggcaacattcgcgcgctggtcgcgaccgatgtggccgcgcgcggcctc
gatatttcggatttgcccggcgtgatcaactacgatctgccgtacaacgccgaagactat
gtgcaccgtatcggccgcacgggccgtgccggcgcgtcgggggttgccctgtcgctgtgc
gcgcccgacgagcgcaagcaactcgtggaaatcgagaagctgatcaagcgcgaactcaag
cgtggccaaatggcgctggagcgtcgtagccgttcgcgcgacgatcggggcgatcgctat
gagcgcggcgaccgtgccgagcgcggtgagcgtagcgagcgccatggccgttctgacggt
ctgcgcgtcggtcgcagcggcggcgcttccatgccgcgtcgcgtgcgcccggaggacgag
ttcttctacaagccgtacgagccgtcgccgacggcgagcgagtcgcagcgcgacacacgt
gcgtcgctcgacgccggagtgcccggcgcttttggcgcgccatccgagaaggcgccgaag
cgtcaggttgccgccttgctcgcaggctttccccgcaaggccggctga
DBGET
integrated database retrieval system
