Pandoraea vervacti: UC34_20295
Help
Entry
UC34_20295 CDS
T03688
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pve
Pandoraea vervacti
Pathway
pve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UC34_20295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pve03019
]
UC34_20295
03009 Ribosome biogenesis [BR:
pve03009
]
UC34_20295
Enzymes [BR:
pve01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UC34_20295
Messenger RNA biogenesis [BR:
pve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UC34_20295
Ribosome biogenesis [BR:
pve03009
]
Prokaryotic type
rRNA processing factors
UC34_20295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJP58645
UniProt:
A0A0C5K1R6
LinkDB
All DBs
Position
4663109..4666414
Genome browser
AA seq
1101 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWHAIEGAAHNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYSRQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDALKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDAPKASYALAEEAARSLEEDPAGYSKKKEDARPRQEAAVKGITP
EQPAPAAQPRPEPVAATAPAAAAPASGGGIFGFIKRLFGIGAAAPAPVKAEEPVKPTARP
PRERHDRPHQQNRNRRGNARDDSKSGKDNAGQPAREGRGARPERAERAERGERNERNERG
DRNDRNERNERGDRNDRQEGRDKRERDDAQRQPSQDVRAEEGREPRERGSRRERGERRER
RQTEGADAQQAAPQRAAAAPLNAEQEVLDQDLLATQAAQVEGAPQVTGEEGEQAGEERRR
SRRRGRRGGRREREAGEQQVNADGEHADIEASEADESTHAPVLSNASAQNVATEVPVHAA
APAIPAPAAVAPAVQAVQAEPAPAPVRAEPVEPFAAPVATVTESAPAATPEVPSHVVSEP
VAQAPATAPAPIAPVNVAPLAAADVTSTPVVPPVHAPLPVATQAPAQQTVPADALTEIAA
TAATASAPTPAEQAPQVAEVVQPPVAVEAAAPEQTAPAAPVQTATAVPVAPEAAAAATEV
VTQKVAPVVVTPTLERSSLESTLASVGLVWVHTDADKHRAAKEAAAQVVPAPRVQRERRP
STPLNSGPMEQVETRSTNHVA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgccacgcagcaggaagaactgcgcgtggcaatcgtcgat
ggacagaaactcatcgacatcgatatcgagacggccggacgcgaacagcgtaaaggcaat
atctacaagggtgtcatcacccgtatcgaaccctctctcgaagcctgcttcgtcaattac
ggcgaaggtcgccacgggttcctgccgttcaaggaagtcgcccgtgcgtacttccgcgaa
ggtgccgatgtgcgcaatgcgcgcattcaggacgccctctccgaaggccaggaactcatc
gttcaggtagaaaaggaagaacgcggcaacaagggcgcagccctcacgacgttcatttcg
ctggcaggccgctacctggtgctgatgccgaacaacccgcgcggcggcggtgtctcgcgt
cgcatcgaaggcgaagaccgtcaggaactgcgcgagacgatgggtcagctcgaactgccg
gaaggcatgagcatcattgcccgcactgccggtatcggtcgctcggccgaagaactccag
tgggacctgaactacctgctgcaactctggcacgccatcgaaggcgctgcccacaacatc
gaactgccgcgcgactcggccctgatctatctcgagtcgagcctcgtcattcgcgcgatc
cgcgattacttccagccggatatcggtgaaatcctcatcgatacggaagaaatttccgaa
caagcccgcaacttcatgcaggtggtcatgcccgatcacctcaaccgcgtgaagcagtat
cgtgacgacgtgccgctgttctcccgtttccagatcgaacaccagatcgagacggcttac
tcgcgccaggtgccgctgccttcgggcggcgcgatcgtgatcgatcacaccgaagcgctc
gtctcgatcgacgtgaactcggcacgtgccaccaagggcgccgacatcgaagaaaccgcg
ctgcgcaccaacctggaagcggcagatgaagtcgcacgccagttgcgtctgcgcgacctc
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtcaaggatgcgctcaagcacgaccgggcccgcgtccagatgggcaagatt
tcgcgcttcggcctgatggaactgtcacgtcagcgcctgcgcccgtcgctgtccgaaggc
acgcacgtgacctgcccgcgctgcaacggcaccggccatatccgcgatgccgagtcgtcg
gcgctgcaagtcctgcgcatcattcaggaagaggcgatgaaggagcacacggcagcgatc
cactgccaggtgccggtcgaagtctccgcgttcctgctcaacgaaaagcgtcaggaaatc
aacaagatcgaagcacgcttcaaggttggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcactacaagctcgagcgcttgcgcttcgacgatccgcgtctggatgctccgaaa
gccagctacgcgcttgccgaggaagcggcgcgttcgctggaagaagatccggcgggctac
agcaagaagaaggaagatgcgcgtccgcgtcaggaagctgccgtcaagggcatcacgccc
gagcagccggcgccggcggctcaaccgcgtccggaaccggtcgcagcgacggcgccggcc
gctgccgcaccggcaagcggcggcggtatcttcggcttcatcaagcgcctgttcggtatc
ggtgctgccgcaccggcaccggtcaaggcagaagagccggtcaaaccgacggcacgcccg
ccgcgtgagcgtcacgaccgtccgcatcagcaaaaccgcaatcgtcgcggcaatgcgcgc
gacgacagcaagtcgggcaaggacaacgcagggcaaccggcacgcgaaggccgtggcgcc
cgtccggaacgcgccgaacgtgcggagcgtggcgagcgcaatgaacgtaacgagcgcggt
gatcgcaacgaccgtaatgagcgtaatgagcgcggcgaccgcaacgaccgtcaggaaggc
cgcgacaagcgcgagcgagatgacgcccagcgtcagccgtcgcaggacgtgcgtgccgag
gaaggccgtgagccgcgcgaacgcggcagccgtcgtgaacgtggcgagcgtcgtgagcgc
cgccagacggaaggtgccgacgctcagcaagccgcaccgcaacgcgccgcggcagcgcct
ttgaacgctgagcaggaagtgctcgatcaggaccttctggccactcaggccgcgcaggtc
gaaggcgctccacaggtgaccggcgaggaaggtgagcaggcgggcgaagagcgccgtcgc
agccgccgtcgcggccgtcgtggtgggcgtcgcgagcgcgaggccggcgagcagcaagtg
aacgccgatggcgaacacgctgacatcgaagcgtcggaagccgacgaaagcacgcacgct
ccggtgctctcgaacgcgtctgcacagaacgttgcaactgaggtaccggtgcacgccgct
gccccggccattccggcacccgcagccgttgcgccggcggttcaggcagtccaggccgaa
ccggccccggcaccggttcgtgccgagccggtggagcccttcgcggcccccgtcgccacg
gtcacggaatctgcaccggccgcaacgccggaagtgccgtcgcacgtggtctctgagccg
gtcgcacaggcgcccgcaacggcacctgcgccgatcgcgccggtcaacgttgcgccgctg
gccgcggcagacgtgacgagcacgccggtcgtaccgccggtccatgcgccactgccggtt
gccactcaggcgcccgctcagcagacggtgccggccgacgccctgacggaaattgccgcc
acggcagcgacggccagcgccccgacgccggccgagcaagcaccgcaggttgccgaagtt
gtccagccgccggttgccgtcgaggcagccgcgccggagcaaaccgccccggcggcaccg
gtgcaaactgcaacggcagtaccggtcgccccggaagccgcagcggccgcgacggaagtc
gtgacgcaaaaggttgccccggtggtcgttacgccgacgctcgaacgcagctcgctcgaa
tcgacgctggcaagtgtggggctggtctgggtccacacggatgccgacaagcaccgcgcc
gccaaggaagccgccgcccaggtcgtcccggcaccgcgcgtgcaacgcgagcgtcgcccg
tcgacaccgctcaacagcggtccgatggagcaagtggaaacgcgctcgacgaatcacgtc
gcctga
DBGET
integrated database retrieval system