Pandoraea vervacti: UC34_23340
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Entry
UC34_23340 CDS
T03688
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pve
Pandoraea vervacti
Pathway
pve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UC34_23340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pve03019
]
UC34_23340
Enzymes [BR:
pve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UC34_23340
Messenger RNA biogenesis [BR:
pve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UC34_23340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
P-loop_SecA
CARD_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
AJP59091
UniProt:
A0ABM5T312
LinkDB
All DBs
Position
complement(5340741..5342402)
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AA seq
553 aa
AA seq
DB search
MSFEKLGLSADILRAVADLGYTQPTPIQLQAIPAVLQGGDLLAGAQTGTGKTAGFTLPIL
QMLSARARPAAANGKRPIRALVLTPTRELAAQVEESVTQYGKYLRLTSMTVFGGVSMVPQ
VKQLSRGVDILVATPGRLLDHMQQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAALP
AQRQNLLFSATFSDEIKQLADGLLKSPALIEVARRNTTAETVAQKIHPVDRDRKRELLEH
LVREHNWFQVLVFTRTKHGANRLAEQLTKGGIPALAIHGNKSQGARTRALAEFKSGTLQV
LVATDIAARGIDIDQLPHVVNFDLPEVAEDYVHRIGRTGRAGANGEAVSLVCVDEHQLLQ
QIERLIKRTIDREVIPGFEPDPHAVAQPIRKNQQGGGRGAGGGRGARTGGGDEGRQSTRA
PRDARQPRDDGRSPRQGGEAKPRREGDRAGGRQGGNGGNGGNGGGNAINVGNSVNVGNVG
GGHRQPAKRQGDAQRAPARTTQGAPAPRQGQGQGASRGQGGGGERGDFGQRGPRPARRDG
AGGALLMGKSKRD
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaaagctcggcctgtcggccgacatcctgcgtgcggtagccgatctcggt
tacacgcagccgactccgattcaactgcaagcgattcccgctgtcctgcagggcggcgat
cttctcgccggcgcacaaaccggcacgggcaagacggcaggctttacgctgccgatcctg
caaatgctgtccgcgcgtgcccgtccggccgccgccaacggcaagcgcccgatacgcgcg
ctggtgctcacgcccacgcgcgagctggccgcacaggtcgaggaaagcgtcacgcaatac
ggcaagtatctgcgcctcacgtccatgaccgtgttcggcggggtgtcgatggtgccgcag
gtcaagcaactctcgcgtggcgtcgacattctcgtcgccacaccgggtcgcctgctcgat
cacatgcagcagaagaccgtggatctgtccggcgtcgagattctcgtgctcgacgaagcg
gatcgcatgctcgacatggggttcattcgcgatatccgtcgcgtgctggcggcgctgccc
gcccagcgtcagaacctgctgttctcggccaccttctccgacgaaatcaagcaactggcc
gacggcctgctcaagtcgcccgcgctgatcgaagtcgcccgccgcaatacgacggccgag
accgtcgcgcagaagatccacccggtcgatcgtgaccgcaagcgcgagttgctcgaacac
cttgtgcgcgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcatggcgcg
aatcgtctggcggaacaattgacgaagggcggcattccggcgctggcaattcacggtaac
aagagccagggggcgcgtacccgtgcgcttgccgagttcaagagcggtacgctgcaagtg
ctggtcgcgaccgatatcgcggcgcgcggcatcgacatcgaccaactgccgcacgtggtg
aacttcgatctgccggaagtggcggaggactacgtgcaccgtatcggtcgtaccggccgc
gccggggcgaacggggaagccgtctcgctcgtgtgcgtcgacgagcatcaactgcttcag
caaatcgagcgtctcatcaagcgcaccatcgatcgcgaagtgattccgggtttcgaaccg
gatccccatgccgtcgcgcagccgattcgcaagaatcagcaaggcggtggccgtggcgcc
ggcggcggccgtggcgctcgcaccgggggtggcgacgagggtcgtcaatccacgcgtgcg
ccacgtgatgcgcgccaaccccgtgacgacggccgctcgccgcgtcagggcggtgaggcg
aagccgcgtcgggaaggcgatcgcgcgggtggccgtcagggcggcaatggcggcaatggt
ggcaatggtggcggcaatgccatcaacgtcggcaatagcgtcaatgtcggcaacgtcggc
ggcggtcatcgtcaaccggccaagcgccagggcgacgcgcagcgcgcacctgcgcgcacc
acgcagggcgcgcccgcgccgcgtcagggccaagggcagggcgcctcgcgcgggcagggt
ggcggtggcgagcgcggtgacttcggtcagcgcgggccgcgcccggcgcgtcgcgacggt
gcgggcggtgccttgctgatgggcaaatcgaagcgcgactga
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