Prevotella veroralis: J5A55_02025
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Entry
J5A55_02025 CDS
T08190
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvf
Prevotella veroralis
Pathway
pvf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5A55_02025 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvf03400
]
J5A55_02025 (mfd)
Enzymes [BR:
pvf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5A55_02025 (mfd)
DNA repair and recombination proteins [BR:
pvf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5A55_02025 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Zeta_toxin
RecG_dom3_C
AAA_22
TniB
AAA_16
UB2H
WD40_alt
Motif
Other DBs
NCBI-ProteinID:
QUB41054
LinkDB
All DBs
Position
1:complement(496351..499914)
Genome browser
AA seq
1187 aa
AA seq
DB search
MKIQDIQKLYAILPQVGAITKIQEDQQVRSIFLQGLVASAAPMFFAAIAERWKKTIVFVL
SDNEEAGYFYNDLKTITMPEDGTSNTAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLTRL
SALATEKGTTNRLPLYIVTDPSALSEQVVSKRQLDERRLSLSVNQHIDIVEVEKTLRSFG
FTETDYVYEPGQFAVRGSILDVYSYSGELPYRIDFFGDDIETIRTFEVESQLSSKKLEHI
EVVPELATLLEEKVPFLHFLPSDSFLAFKDFLYVRDAIENIYKEGFTAQALTVQREGKTE
VEQHELEQAFRKEGQLITASHFMNEALNYRRIEFGVTHSISDTAKKADGQHVTIQFNTTA
QPLFHKNFDLLSKTLRDYLLQGYKLYIFADSEKQTIRLKDIFESLSNPDMVPDSENLSVV
EATTNSQGETKVRALPFTPVNRTIHEGFVDNTLKVCFFTDHQIFDRFHKYNLKSDKARQG
KMALTMKELQEMEPGDFLVHVDFGIGKFAGLVRVPTGDSYQEVIRLVYQHNDIVDVSIHS
LYKISKYRRGNSGEPPLLSVLGSGAWDRLKERAKKRIKDLARDLIKLYAKRRREKGFAFS
PDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFK
AAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVIEDLAEGKI
NILVGTHKLIGKTVKWHDLGLLIIDEEQKFGVTTKEKLRQLKTNVDTLTMSATPIPRTLQ
FSLMGARDMSIMRTPPPNRYPIQTQIASFSHEVIADAINFEMSRNGQVYFVNNRVGNLPE
IANLIKKYVPDCRVAIGHGQMKPEELEKIIMGFMNYDYDVLLSTTIVENGIDISNANTII
INEAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNSDARHRLLALETFSDLGSGFN
LAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILSQAVTELKNDEFQDLYAEEMNEGKQ
ITGDDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLEAYRQRLIDRFGP
VPRQGEELMQVVALRRIGKRLGCEKIILKQERMQMQFVSNPNSMYYQSAAFGKVLNYIGY
HPRQCNLKEKNGKRSMVVSDVKSVEQAVKVLREIDKENNDFSTKQKH
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgaagatacaagacatacaaaaactatatgctatcttgccacaggtgggggcgataaca
aagatacaagaagaccaacaagtgagaagcatcttcctgcaaggactggtggcatcagcc
gctccaatgttctttgcagctatagccgaacgatggaagaagacgattgtcttcgtactt
agtgataatgaggaggcaggctatttctataatgacttaaagacaattactatgcccgaa
gacggcacgagcaacacggcagaggtgctcttcttcccctcttcctatcgtcgtgcagtc
aaatatggacagagggatgctgggaatgaaatcctgcgaacggaggtgctcacacgctta
tcggcattggctacggagaaagggacgactaacaggctcccactctatattgttaccgac
ccctcggcactatccgagcaggttgtatcaaagcggcagttagatgaacggcgtctctcg
ctttctgtcaatcagcacattgatatcgttgaggtagagaagaccttgcgctcattcggg
ttcacggaaaccgattatgtgtatgagcctggacaattcgctgtacgtggtagtattctt
gatgtttattcctactctggtgaactgccctatcgtatcgacttctttggcgatgatata
gagacgattcgcactttcgaagtagagagccagttatcaagtaagaagttagaacacata
gaggttgtacccgaactggctactctgttagaagagaaagtgccgttccttcacttcttg
ccatccgatagtttccttgcattcaaagacttcctttatgtgcgtgatgctatcgaaaac
atttataaagagggcttcactgcacaggcattaacggtgcagagggagggaaagacagag
gtggaacagcacgaactggagcaggcgttccgtaaagaagggcaactcatcacggcatca
cactttatgaatgaggctctaaactatcgtcgcatagagttcggagtgacccattctatc
agtgatacagcaaagaaagcggatgggcaacatgtaacgattcaatttaacacgaccgct
caaccgctatttcataagaacttcgatctactgtcaaagacgctccgtgactatcttcta
cagggttacaagctatacatctttgcggatagtgagaagcaaacaatacgcctgaaagat
atattcgaatcgttatctaacccagatatggtacccgattcggagaatctgtcagtcgtt
gaagctactaccaatagccaaggtgaaaccaaagttagggctttgccattcactcccgtt
aaccgaacaatacacgagggattcgttgataataccttaaaagtatgtttcttcacagat
catcagatattcgatagattccataagtataacctcaagtcagataaagcacgtcagggc
aagatggcactgacgatgaaagaactgcaagagatggaacctggcgactttcttgtgcat
gttgactttggtatcggtaagtttgctggactcgtccgagtgcctacaggcgattcatat
caggaagtgatccgcctcgtttatcagcataatgacatcgtggatgtgtccattcattcc
ctttataagattagtaagtatcgcagaggcaattccggtgaacctccattgttatctgtc
ttgggctctggagcatgggacagattgaaagagagagcgaagaaacgaatcaaagatctt
gctcgtgaccttatcaaactatatgctaaacgccgcagagaaaagggctttgctttctcg
cccgactcgtttatgcaacatgaattggaggcttcgttcttatatgaagatacgcccgac
cagctaaaggcaacgcaggaactgaaacaggatatggaaagtgcacgccctatggatcga
ctggtttgtggtgatgtgggctttggtaagaccgaagtcgctatacgtgctgccttcaaa
gctgccgtagataacaaacaagtggcggtattagtacctaccacagtattggcttttcag
cattatcaaacattcaagaagcgactgaaggatatgcctgttcgggtggattacctatcc
cgtgcccgtagtgcaaagcaaacgaagcaggtgatagaagaccttgccgaggggaagata
aacatccttgtgggtacgcataaactgattggtaagaccgtaaagtggcatgacttagga
ttgcttatcatcgatgaggaacagaagttcggggtaactacaaaggagaagttacgccag
ttgaagacgaatgtagatacactcacgatgtcggcaacacctattccacgaacgttgcag
ttctctttgatgggcgcacgtgacatgagtatcatgcgcacaccaccccccaatagatat
ccaattcagacccagattgcctcgttctcacatgaggtaatagccgatgcgattaacttc
gagatgagtcgcaatggtcaggtatatttcgtgaataaccgcgttggtaatcttccagag
atagccaatcttattaagaagtatgtcccagactgccgtgtggcaataggacatgggcag
atgaagcctgaggaactagaaaaaatcatcatgggattcatgaattacgactatgatgtg
ttgctctcgaccactatcgtggagaatggaattgatatttctaatgcaaataccataatc
attaatgaggctcatcggttcggattgtctgacttgcatcagatgcgtggtcgtgtggga
cgctctaacaaaaaggctttctgctatcttcttgctccaccattagctgcgcttaactct
gatgcacgccatagattgctggctttggagactttctccgacttagggagtggttttaat
ctggctatgcaggaccttgatattcgtggtgcgggtaatcttctgggttcggaacagagt
ggctttatggaggatttgggctatgaaacctatcaaaagatacttagtcaggcagtcacc
gaactaaagaatgacgagttccaagacctttatgcggaggaaatgaacgaagggaagcag
attacgggagatgactttatagatgattgcgctgttgagagcgacttagagatgtacttc
ccagataactatgtacccggtagttcggagcgaatgttgctttatcgcgaattagataac
attgagaaagatgaggacttagaggcttatcgccaacgtctgatagaccgtttcggtcct
gttccacgtcaaggtgaggagttgatgcaggttgttgcgctacgacgcataggcaagcga
ttggggtgcgagaagattattctcaagcaagaacgcatgcagatgcagtttgtctctaat
cccaacagcatgtactatcaaagtgctgccttcggtaaggtacttaattacatcggttat
catccccgccagtgtaacttgaaagagaagaatggcaagcgatctatggtagttagcgat
gtgaagagcgttgagcaggcagtgaaagtattgagagagatcgacaaagagaataatgac
ttctctaccaaacagaaacactaa
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