Proteus vulgaris: CRN77_18140
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Entry
CRN77_18140 CDS
T05486
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pvg
Proteus vulgaris
Brite
KEGG Orthology (KO) [BR:
pvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvg03016
]
CRN77_18140
Enzymes [BR:
pvg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CRN77_18140
Transfer RNA biogenesis [BR:
pvg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CRN77_18140
Prokaryotic type
tRNA splicing ligases
CRN77_18140
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF4402
TFX_C
Motif
Other DBs
NCBI-ProteinID:
ATN01537
LinkDB
All DBs
Position
complement(3946323..3947546)
Genome browser
AA seq
407 aa
AA seq
DB search
MILDHQIIKEAGTAEIKMWTNGVPVEADALKQLINTAKMPFIFKHMAVMPDVHLGKGSTI
GSVIPTKGAIIPAAVGVDIGCGMIAVKTSLHANDLPDNLFAIRTAIERAVPHGRTSYQSG
NDRGSWKNPPKLVDQHWQQLEGRFKVLTDKYPRLRNTNNYRHLGTLGTGNHFIELCLDEA
DNVWVMLHSGSRGVGNAIGTLFIQMAQEDMREHIANLPDKNLAYLKEGTLFYDDYIEAVE
WAQDFARHNREIMMERVLAALSTEITKPFTTQQQAVNCHHNYVQKEMHFGEEVLVTRKGA
VSAQKGEMGIIPGSMGAKSFIVRGKGNAESFCSCSHGAGRVMSRTAAKKTFSVEDQIRAT
AHVECRKDEDVIDEIPMAYKDIDAVMKAQLSLVEVVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatattggatcatcaaataataaaagaagcagggactgctgaaatcaaaatgtggaca
aatggtgtacctgttgaagcagatgctctaaagcaacttatcaataccgccaagatgcct
tttatttttaaacatatggcagtaatgcccgatgttcacttagggaaaggttcaacaata
ggaagtgttattccaacaaaaggtgcgattattccggctgctgttggtgtggatattgga
tgtggaatgattgcggtaaaaacatcattacacgcaaatgatctgccagataatttgttt
gccataagaacggcaatagaaagagcagtacctcatggacgaacaagttatcagtcaggg
aacgatcgtggttcatggaagaacccacctaaacttgttgatcaacattggcaacaactt
gaagggcgttttaaggttttaactgataagtatccacgtttacgaaatacgaataactat
cgtcacctaggtacattaggaacaggaaaccactttatcgagttgtgccttgatgaagca
gataatgtttgggtaatgctacatagtggatctcgtggtgtgggtaatgccatcggtacg
ttatttatacaaatggcacaagaagacatgagagaacatatcgctaacttgccagataaa
aatttagcgtacttaaaagaaggaacgcttttctatgatgactatatagaagccgtagaa
tgggcacaggattttgcccgacataaccgtgaaattatgatggaacgcgtgttggcggca
ttatcaacagaaataacgaaaccttttacgactcaacaacaggcagtgaactgccaccat
aattatgtgcaaaaagaaatgcactttggtgaagaggtactggtgactcgaaaaggggca
gtttcggctcaaaaaggcgaaatggggatcattccgggttcaatgggagcgaagagcttt
attgttagaggtaagggaaatgccgaaagtttctgttcatgtagccatggcgcaggacgc
gtaatgagccgaacagctgcgaaaaaaacctttagtgttgaagaccaaattcgagcaaca
gcacatgtggaatgtcgaaaagatgaagatgtgattgatgaaattccgatggcttataag
gatattgatgctgttatgaaggcccagttatcacttgttgaggttgttcatacactacga
caggttgtttgtgtaaaaggataa
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