Candidatus Phytoplasma vitis: M6G77_02330
Help
Entry
M6G77_02330 CDS
T08290
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pvh
Candidatus Phytoplasma vitis
Pathway
pvh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M6G77_02330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvh03019
]
M6G77_02330
Messenger RNA biogenesis [BR:
pvh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M6G77_02330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
SpoIVA_C
Motif
Other DBs
NCBI-ProteinID:
USQ93314
LinkDB
All DBs
Position
complement(545936..547630)
Genome browser
AA seq
564 aa
AA seq
DB search
MDLLNKNPELENFDIFFYALGGLGEVGKNMYILEIEQKIFIIDSGISFFGDSFLGINYVI
PNYEYLLQNEHRIVGLFITHGHEDHIGGIPFLLKKIKINNIFVSGIAFNLIESKLIEHKL
HKYIRIMTKYNNDSKFKFGNTEISFIRMNHSIPDTFGIVFNNKDRIIFYTGDFKIDNTPV
GPLAEYGKLVELNKKNILCLLSDSTNAQNKESIPSENEIRKTIDQLFYKIKGRIIIVTFA
SNFYRIKQIIEASILTKRKIAIFGRSMEKAVENGIKNGYLNIPKDTIVNGNNIEKYHNIT
LICTGSQGEPLAALSRMAHGIHRQIRLFKKDTVIFSSSPIPGNQDSINKVLDLLFKMDVD
VIIHGDVVNTHASGHASQNDLKLLLNLVKPKFFIPVHGSHIMLMAHKKLAIDCGIKSENI
FILDNGDVAGISEQSVKKLDNQIVANNIFIDESGTDDLSNCVLKERKILSEEGLFSIIAS
INLKYNKILNFPIIFSRGFIYMKSNKELMKKFSSEIKKIIEDYLYKNDKINKNQLKKIIV
DFITPKIYELTLRNPIIIPIILTI
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggatttattaaataaaaatcctgaattagaaaattttgatatatttttttacgctcta
ggaggtctaggcgaagtcggaaaaaatatgtatattctagaaatcgaacaaaaaatattt
atcattgattcaggtatttctttttttggagattcttttttaggtattaattatgttatc
cctaattatgaatatttattacaaaacgaacatagaattgtgggtctttttattacacat
ggccacgaagatcatattggcggtattccttttttattaaaaaaaattaaaattaataat
atatttgtttctggtatagcattcaatttaattgaatccaaattaatcgaacataaatta
cataaatatatacgcatcatgacaaaatacaataatgattctaaatttaaattcggaaat
acagaaatttctttcataagaatgaatcactctattcctgatacttttggtatagtattc
aataataaagatagaattattttttatacaggagattttaaaattgataatacacctgtt
ggacctttagcagaatatggcaaacttgttgaattaaataaaaaaaatattttatgtctt
ttgtctgattctacaaatgcacaaaataaagaaagtattccttcagaaaacgaaataaga
aaaactatcgatcaactattttataaaatcaaagggagaattataatcgttacttttgct
tctaatttttatcgtatcaaacaaattattgaagctagtattttaacaaaaagaaaaatt
gctatttttggacgtagtatggaaaaagctgttgaaaacggaattaaaaatggttattta
aatattccaaaagatacaattgtaaatggaaataatatagaaaaatatcacaatattacc
ttaatttgtactggatcacaaggagaaccattggccgctcttagtagaatggcgcatgga
attcatagacaaattagattatttaaaaaagacacggttattttctcttcttctccaatc
cctggtaatcaagatagtataaataaagttttagatttactttttaaaatggatgtagat
gttattattcatggagatgttgttaatactcatgcctcaggacatgcaagccaaaacgat
ttaaaattattattaaatttagttaaacctaaattttttattcctgtacacggatcgcat
atcatgttaatggctcataaaaaattagctattgattgcggtattaaatctgaaaatatt
tttattttagataacggagatgtagctggtataagtgagcaatctgttaaaaaattagat
aatcaaattgtagcaaataatattttcattgatgaatcaggaacagacgatcttagtaat
tgtgtattaaaagaaagaaaaattttgagcgaagagggtttattttctattatcgcaagt
attaatttaaaatataataaaatattaaattttccaattattttttcacgtggttttatt
tacatgaaaagcaacaaagaattaatgaaaaaattttcttctgaaattaaaaaaataata
gaagattatttatataaaaatgacaaaataaataaaaatcaattaaaaaagattattgtt
gattttataactcctaaaatttatgaattaactttaagaaacccaattataattcctatt
attttaacaatataa
DBGET
integrated database retrieval system
