Candidatus Phytoplasma vitis: M6G77_02550
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Entry
M6G77_02550 CDS
T08290
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
pvh
Candidatus Phytoplasma vitis
Pathway
pvh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pvh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M6G77_02550 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvh03021
]
M6G77_02550 (rpoE)
03400 DNA repair and recombination proteins [BR:
pvh03400
]
M6G77_02550 (rpoE)
Transcription machinery [BR:
pvh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M6G77_02550 (rpoE)
DNA repair and recombination proteins [BR:
pvh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M6G77_02550 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HARE-HTH
Motif
Other DBs
NCBI-ProteinID:
USQ93356
LinkDB
All DBs
Position
complement(607433..607972)
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AA seq
179 aa
AA seq
DB search
MEKNNKKIDSSSAMIDISYQILSQNKKPMNIQQLIEEVFKIKKLDINNKEICIQLYLDIV
LSGCFVFCGDDLWNIKENNLNFWDKDFFINPNEQKIEIKKDLEKEILDFNEFDLKPKSNE
ENDEYEEEKLNDIPLDNLDINDEKEELEINEEEIDDIEKDKNNAEDDEYINDYEEYFYK
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaaaataataaaaagattgattcatcaagtgctatgattgatatttcttatcaa
atcttatctcaaaacaaaaaacctatgaatatccaacaactaatagaagaagtttttaaa
attaaaaaattagatataaataataaagaaatttgtattcaattatatttagacattgtt
ttgagtggttgttttgttttttgcggagatgatttgtggaatattaaagaaaataatttg
aatttttgggataaagatttttttattaacccaaatgaacaaaaaatagaaattaaaaaa
gatttagaaaaagaaattttagattttaatgaatttgatttaaaaccaaaatccaatgaa
gaaaatgatgaatacgaagaagaaaaattaaacgatatacctttagataatttagatata
aatgatgaaaaagaagaattagaaattaatgaagaagaaattgatgatattgaaaaagat
aaaaacaatgcagaagacgatgaatatataaatgattatgaagaatatttttataaataa
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