Chlorobium phaeovibrioides: Cvib_0105
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Entry
Cvib_0105 CDS
T00499
Name
(GenBank) DNA ligase, NAD-dependent
KO
K10754
replication factor C subunit 1
Organism
pvi
Chlorobium phaeovibrioides
Pathway
pvi03030
DNA replication
pvi03410
Base excision repair
pvi03420
Nucleotide excision repair
pvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cvib_0105
03410 Base excision repair
Cvib_0105
03420 Nucleotide excision repair
Cvib_0105
03430 Mismatch repair
Cvib_0105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvi03032
]
Cvib_0105
03400 DNA repair and recombination proteins [BR:
pvi03400
]
Cvib_0105
DNA replication proteins [BR:
pvi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Cvib_0105
DNA repair and recombination proteins [BR:
pvi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Cvib_0105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ABP36129
UniProt:
A4SCC0
LinkDB
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Position
complement(126768..128234)
Genome browser
AA seq
488 aa
AA seq
DB search
MRKEDFTALNDTRPEEDRFANPRNATAGTLKLQDSAEVAVRRLWFVAYYLDGIQDPDTPH
FHRLQLLETAGFFTGGHYRLCKGMQEIAAFIARWNEERWHLPYETDGVVLKLNDVRQWKT
LGATSKSPRWAIAYKYPAQQATTVLRDVVFQVGRLGTITPVAELEPVRLAGSTVSRSTLH
NFDEMRRLGIMIGDRVVIEKSGEVIPKVIRVVTEARPVDARLVELPSRCPACSTPIVREE
GEVGFYCPNEAGCPAQLKGRILHFASRNAMDIQNLGEALVEQLVAFGLVHDPGDLYFLQE
PQLRNLERMGPKSAQNVVRALDESRSQSYARLLFALGIRHVGQATARELARAFPSIEALE
AASEEELADVADIGPVIARSIREWFEAPAVSALLEKLRDARLPLAAEDPKPLINSNFEGL
SVVFTGALLRHDRQSASELVLERGGKIVSTVSKKTGLVVAGREAGSKLEKALKLGLRVIS
EEEFEAML
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaggaggatttcacggcgctgaacgatacccgtcccgaagaggaccggttcgcc
aatccccggaacgccacggccggaaccctcaagctgcaggattcggctgaagttgcggtg
cgccggctctggttcgtcgcctactacctcgacgggatccaggatcccgacaccccccac
ttccatcgactacagctgcttgaaacagcgggcttcttcaccggcggccactaccggctc
tgcaagggtatgcaggaaatcgccgcattcatcgcccgttggaacgaggagcgctggcac
cttccctacgagaccgacggcgttgtattgaagctgaacgacgtgaggcagtggaagacc
ctcggtgcgacgagcaagagcccccgctgggcaatcgcctacaagtacccagcccagcag
gccacgaccgtgcttcgtgacgtggtcttccaggtgggccggctcggtaccatcacgccg
gttgcggaacttgagccggtacggcttgcgggctcgaccgtgtcgcgttctaccctgcac
aacttcgacgagatgcggcgccttggcataatgattggcgaccgggttgtcatcgagaag
tccggcgaggtgatcccgaaggtgatccgtgtcgtcactgaggcgcgtcccgtcgacgcc
cgtttggttgagctgccctctcgctgccctgcgtgcagcacgccgatcgtccgggaggag
ggggaggtcggtttttactgcccgaatgaagcgggttgcccggcgcagctgaaaggccgg
atcctgcacttcgcatcccgcaacgccatggacatccagaacctcggcgaggcgcttgtc
gagcagctggttgcattcggcctcgtgcatgatcctggcgacctgtacttcctgcaggaa
ccgcagctccggaaccttgagcgcatgggaccgaaatctgcacagaatgtggtaagggcg
ctcgatgaaagccgcagccagagctacgcacgcctgcttttcgcactcggtatacgccac
gtcggccaggctacggcacgtgagctcgcacgtgcatttccctcaattgaagcgcttgag
gccgcctccgaggaggaacttgccgatgtggccgacatcggcccggtgattgcccggagc
atcagggagtggtttgaagcgcctgccgttagcgcgctccttgaaaaactccgtgatgcc
cgccttccgcttgcagccgaagatccgaagccgctcataaacagcaatttcgaggggctc
agtgtcgtctttaccggtgcgctcctgcgccacgaccgccagagtgcatccgagctggtg
ctggagcggggtggaaagatcgtttctacggtcagcaaaaagacggggctcgttgtggcg
ggcagagaggctggcagcaagctggaaaaggccctcaagctgggactcagggtcatcagt
gaggaagagttcgaagcaatgctgtga
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