Chlorobium phaeovibrioides: Cvib_0510
Help
Entry
Cvib_0510 CDS
T00499
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pvi
Chlorobium phaeovibrioides
Pathway
pvi03410
Base excision repair
pvi03430
Mismatch repair
pvi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cvib_0510
03430 Mismatch repair
Cvib_0510
03440 Homologous recombination
Cvib_0510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvi03400
]
Cvib_0510
DNA repair and recombination proteins [BR:
pvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cvib_0510
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cvib_0510
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cvib_0510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABP36532
UniProt:
A4SDH3
LinkDB
All DBs
Position
595863..597587
Genome browser
AA seq
574 aa
AA seq
DB search
MKRYRWNLPPVDDAALTSFACSIKASLPLARIFFMRGVKSYDAAEAFFTASLETLPSPSL
FASMPKAVGRVQEAIRSGEKIMIYGDYDVDGITGTAMLNLFLRDRDADVSYYINNRFEEG
YGLSMEGIRAAAERQVGLIITVDCGISANLAIERAGELGMDVIVCDHHEPEELPDAYAIL
NPKVPGCSYPFRELCGCGVAFRFVQAIAEELQLSAESWQQYLDLVAIATAADMVVLSEEN
RTMVREGFRMMQQRPRVGIEAMLSFMKVNPRDLGMTGVTFGIAPRINAAGRMGSARKAVD
WLLAESKDEAHKHTGELEELNILRRRTDLEMLKRAEEMVEGHFASYCSSIVLYDESWHLG
VVGIVASKMLERYHLPTVILGASKELVKGSVRSVPGLNIYSVLQECSDLLEQFGGHHQAA
GVSMRPENLPAFRKRFDEISARVLDMDARQKELTVDTELGLGEITGNFMKALQRFSPYGV
GNPEPLFLTEGLQCTGSVRLLKERHVKFMVRDASGKRLDVIAFDRKDIYDALMESSGQSF
SMVYSLELHEWNGRVEPQAKVKDLSVESLHRQGL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctaccgctggaaccttcctcccgttgatgacgccgcgctcacatcttttgcc
tgcagcatcaaagcctcccttccgcttgcccggatatttttcatgagaggggtgaagagt
tatgatgctgctgaagcctttttcactgcatctctggagactcttccttcaccttcgctc
tttgcttccatgccaaaagcggttggccgtgtgcaggaggcaatccgctctggtgaaaaa
atcatgatatacggcgactatgatgtggacggcattaccggaacggcgatgctgaatctt
tttttaagggatcgggatgcggatgtttcctattacatcaacaaccggtttgaagaggga
tatgggttgtcaatggagggtatcagagcggcagccgaacggcaggttgggctcatcata
acagtggattgtggcatcagtgccaatctggcgatagaacgggccggggagctggggatg
gatgtcattgtctgtgaccatcatgaaccggaagaactgcctgatgcctatgccattctg
aaccctaaagttccggggtgcagctatccgttcagggaactctgcgggtgcggcgtggcc
ttcagattcgttcaggccattgctgaagagcttcaactcagtgcagagagctggcagcag
tatcttgatcttgttgccattgccaccgctgccgacatggtggttctttcggaagagaac
cggacgatggtgcgggaaggtttcagaatgatgcagcaacggccacgggtgggcattgag
gccatgctgtcatttatgaaggtgaacccccgggatttgggcatgaccggtgtcacattt
ggtattgccccccgcatcaatgccgcaggtcggatgggatctgcccgcaaggcggttgac
tggctgcttgccgagtcaaaagatgaggcccataagcataccggagagcttgaagagctg
aacattcttcggcgccgtacggacctggagatgctgaaacgggcggaggagatggttgaa
gggcattttgcatcatactgctcatccattgttctgtatgacgagagctggcatcttgga
gtggttggcatcgtagcttcaaaaatgcttgaacggtaccatcttccgactgttattctt
ggggcttcgaaggagctggtgaaggggtcggtcagaagtgtacccgggctgaacatctac
agtgttctgcaggagtgttcagatcttcttgagcagttcgggggtcatcatcaggctgcg
ggggtgtcgatgcgtccggagaatcttccggccttcagaaagcggtttgatgagatttca
gcgagagtccttgatatggatgcccggcagaaggagcttactgtcgatacggagcttggt
ctgggtgagattaccggcaacttcatgaaagcacttcagcgattttccccgtatggagtg
ggaaaccccgagccgttgtttcttacagaaggattgcagtgcactggttctgtaaggctg
ctgaaggagcgtcatgtgaagttcatggtgagggatgcgtccggaaagcgacttgatgtc
attgcctttgaccggaaagatatttacgacgcattgatggagtcatccggtcagtcgttt
tcaatggtctactctcttgaactgcatgagtggaatggtcgggtagagccacaggcaaaa
gtcaaggatctttccgttgagagtctgcaccgtcagggtctgtga
DBGET
integrated database retrieval system
