Chlorobium phaeovibrioides: Cvib_0574
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Entry
Cvib_0574 CDS
T00499
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pvi
Chlorobium phaeovibrioides
Pathway
pvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cvib_0574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvi03019
]
Cvib_0574
03016 Transfer RNA biogenesis [BR:
pvi03016
]
Cvib_0574
Enzymes [BR:
pvi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cvib_0574
Messenger RNA biogenesis [BR:
pvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cvib_0574
Transfer RNA biogenesis [BR:
pvi03016
]
Prokaryotic type
tRNA degradation factors
Cvib_0574
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rrp44_S1
RNase_II_C_S1
ZFYVE21_C
Motif
Other DBs
NCBI-ProteinID:
ABP36596
UniProt:
A4SDN7
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All DBs
Position
665741..668125
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AA seq
794 aa
AA seq
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MARQRYSKKTKPQEGTRRRPDSRTNSRSSGERVKPNDHILINEFLFKRGESSMAAEIVNF
LSDHEKERYRSVELAKVMGYGESRQLPGFWYVLHKLQEEGAVDKDSNRCYGMASPDASYE
EHIQHQKTFPVPDKEQYKVDKTYTGFITTHPNGYGFVKVDGFDDDVFIKANDMNSAIHGD
EVEVLVAKVPSSYSSRSTPHQRCEGLITNIINRRITTIVGTLVRANRRFNLKADERKILP
EIIISIKNSAKAKDGQKVLVGELDFSKEGTIQAKVLEILGTAGDSAVEVSAIARSKGIDE
TFEKEIIKAAETIKMGVTDKDLKERLDIRDKVLFTIDPVDAKDFDDALSVESLGDGNWRI
GVHIADVSHYVPEDSALDKEALKRSTSVYLVDRVIPMLPSRLSEDICSLNPGVDRMAFSV
FFTMNEKGKVSKQEFHKTVIHSKRRFTYEDVQDILNNGKGDYLMELQLLEKISVLLREER
FRHGGLDFETEEVRFRLGSKGEPLEVMKKERLGSHRLIEEFMLLANRKVAEHLTKTFKDG
KKEPQPVIYRVHGSPQQERVTILANFVKKMGYELKLNKGKDGPIVSAKALRELLQKVRGS
NVEFLVNELVLRCMSKAVYTGENDGHYGLGFDHYTHFTSPIRRYPDLIVHRMLFEYEAFR
KKRRKITPARIAELTQKIETVCRISNEREKIAVEAERESIKLKQVEYMQSHTGKVYPGVI
SGATEYGIYVRMVDFAIEGLVHMRNLTDDYYEFDEKSYSLVGKRRKKRLQIGQKVKVKVH
EVDMQRRTIDLTLG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
gtggcaagacagcgatacagcaaaaaaacaaagccccaggaaggaacccgccgtcgtccg
gattcacggacgaactcccggtcaagcggcgagagggtaaagcccaatgatcatatcctc
atcaacgagttccttttcaaacgcggtgaaagttccatggccgctgaaattgtcaacttt
ctttccgaccatgaaaaagagcggtaccgctcggtagaacttgccaaggtgatgggttac
ggcgaatcccgccagctccccggattctggtatgttctccataagctgcaggaagagggt
gctgtcgacaaggattccaaccgctgctacggcatggcgagccccgatgcctcctatgaa
gaacatatccagcatcagaagactttccctgttccagacaaggaacagtacaaggttgat
aaaacctataccggcttcatcaccacccatcccaacggttacggtttcgtgaaggttgat
ggcttcgatgatgatgtgttcatcaaggccaacgacatgaactccgcaattcacggcgat
gaggtcgaggttcttgttgccaaggtcccttcctcctactcatcacgctccacgccgcac
cagcgctgtgagggcctgatcaccaatatcatcaaccgccggataaccaccattgtggga
acgcttgtccgcgccaatcgccgcttcaacctcaaagccgacgagcggaagattctgcct
gaaatcatcatctccatcaagaattctgccaaggccaaggatggccagaaagtgcttgtc
ggtgaacttgacttcagcaaagagggaaccattcaggcaaaggtgcttgagattctcggc
actgcaggcgactctgccgttgaagtaagcgccattgcccgcagcaagggtattgacgaa
acatttgaaaaggagattatcaaagcggccgaaaccataaaaatgggtgtgaccgataaa
gatctcaaggagcggcttgacattcgcgacaaagtgctctttaccattgaccctgttgac
gccaaagattttgacgacgcgctctccgtcgaatccctgggcgacggcaactggcgtatc
ggtgtccatattgccgatgtgtcgcactatgtgcccgaagactcggctctcgacaaagag
gcccttaaacgatcaacctccgtctaccttgttgaccgcgtcattccgatgcttccctca
cggctttcagaggatatctgcagccttaaccccggtgttgaccggatggccttttcggtg
tttttcaccatgaacgaaaaaggcaaggtgagcaaacaggagttccacaagacagtaatt
cacagcaagcgccggttcacctacgaagatgtacaggacatactcaataacgggaaaggc
gattacctgatggagctgcagttgctcgagaagatcagcgtgcttcttcgtgaagagcgt
ttccgtcacggaggcctcgactttgaaaccgaggaggtccgcttcaggctcggcagcaag
ggagagccgcttgaggtgatgaaaaaggaacgactcggcagccaccggctcattgaagag
tttatgctgctggccaaccgcaaggtggctgagcatctcaccaaaaccttcaaggatgga
aagaaggagcctcagccggtgatttaccgtgttcacggttctccccagcaggaacgggtg
accattctggccaactttgtcaagaaaatgggctacgaactcaaactcaacaaaggcaag
gatggcccgattgtatcggccaaagcgctccgggagctccttcagaaggtccgcggcagc
aatgttgaatttctcgtcaacgagctcgtgctccgatgcatgtcgaaagctgtctacacc
ggtgaaaacgacggccattacggcctcgggtttgatcactacacccacttcacctccccg
atcagacgctaccccgatctcatcgtccatcgtatgctctttgagtacgaagcattccgt
aaaaagcgccgcaagatcacccctgcaaggattgctgaactgacccagaaaatcgagacg
gtctgccgcatttccaatgaacgggaaaagattgccgttgaagccgagcgggaatcaatc
aagctgaagcaggtggagtatatgcagagccataccggcaaggtttatcccggtgtcatc
tcaggagcaaccgaatacggcatctatgtccgtatggtcgactttgccattgaagggctg
gtgcatatgcgcaacctcacagacgactactacgaatttgatgagaaatcctactcactt
gtcggcaaacgccgcaaaaagcgcctgcagattggccagaaagtaaaagtgaaggtgcat
gaagtagacatgcagcgccgcaccatagaccttacacttggctaa
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