Chlorobium phaeovibrioides: Cvib_0919
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Entry
Cvib_0919 CDS
T00499
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pvi
Chlorobium phaeovibrioides
Pathway
pvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cvib_0919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvi03019
]
Cvib_0919
Enzymes [BR:
pvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cvib_0919
Messenger RNA biogenesis [BR:
pvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cvib_0919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Phage_integrase
Cas3-like_C_2
DsrH
Motif
Other DBs
NCBI-ProteinID:
ABP36933
UniProt:
A4SEM4
LinkDB
All DBs
Position
1036599..1037837
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AA seq
412 aa
AA seq
DB search
MQFSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPIL
QRLGESRVQGRIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISR
LKNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEK
QSLFFSATMPPDIVRLSSTILHNPAKISVTPPSSTVEIINQQIYFVDKGNKSPLLVHLLK
NPDITTALVFTRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRVLVA
TDIAARGIDVDELQHVINYDTSNIPETYVHRIGRTGRAGASGTAISFCDAEEKAYLKDIE
KLIAKSIPVVEEHPFPLVDHNPVKAAQQQGRGRSGHPAPRPQGNSRPKQRRY
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgcaattcagctcacttcatatcattgatcccatccttcaggcacttcaggaagaggga
tacagccatccaaccccgattcaggccgaagccattcccgttgtactcaaaggaggcgac
atactgggatgcgcgcagaccggaaccgggaaaaccgcagcctttgccatacccattctg
cagcgtctcggcgaatcccgtgttcagggaaggattaaaaaaatccgttccctcattgtc
actccaaccagggaactggcaattcagattggagaaagcttttcggcctatgggcgacac
acgccgctcaccaacacggtaatctttggcggagtcaaccagaacccgcagatcagcaga
ctcaaaaatggggtagatattctcgttgctactccgggccgactgctcgacctcatgaac
caggggttcatcaacctgcatgatgttgagattctcgttcttgacgaagccgacagaatg
ctggacatgggcttcatccatgacatccgcaaagtccttgccgccctgccaaaagagaaa
cagtcccttttcttttcagccacaatgccccccgacattgtccggctgtcctctacgatt
cttcacaaccctgcaaaaatatcggtcactcctccctcatctaccgttgaaatcatcaac
cagcagatatactttgttgataaaggaaacaaaagcccccttctggtgcaccttctgaag
aaccccgacatcaccaccgcactggtcttcacgagaaccaaacatggagccgacaaggtt
gtcaagcatttgctgaaaaacggcattaccgctgaagccattcacggcaacaaggcacaa
aatgcacgacagagggctctgtcaaatttcaagtcacagaaaacccgtgtgctggtggcc
accgatattgcggcaaggggaattgatgtggacgaacttcagcatgtcatcaattacgac
acatcgaacattcccgaaacctatgtacaccgtatagggcggaccggacgcgcaggagca
tcgggcacggccatctccttctgtgacgcagaagagaaagcctacctgaaggacatagaa
aaactcattgcaaaaagcatccccgtcgttgaggaacatccctttcctcttgttgaccac
aatcccgtcaaagctgcacagcagcaaggccgtggccgaagcggacaccctgcccccaga
cctcagggcaacagccgtccgaagcagcggcgctactga
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