Chlorobium phaeovibrioides: Cvib_1149
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Entry
Cvib_1149 CDS
T00499
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pvi
Chlorobium phaeovibrioides
Pathway
pvi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cvib_1149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvi03400
]
Cvib_1149
Enzymes [BR:
pvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cvib_1149
DNA repair and recombination proteins [BR:
pvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cvib_1149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
Glyco_tran_WecG
AAA_19
RecG_dom3_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABP37161
UniProt:
A4SFA2
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All DBs
Position
1293693..1297031
Genome browser
AA seq
1112 aa
AA seq
DB search
MHENIVYRPLMKTISDTDLHSAPLKRKNAGFLIETLRQSEPFRKLLSALKTPASPRQKAI
DIAGIHGSLAPLLSTAIHAATDEVVVILAAQSSFELYLHDLPSLVSGNTTFNTSDELPAA
IEALRKKTRPLILSLQSELLAPLCSPPESEHRMFPIAVDMECGYERIRQFLTENSFEQRD
FVENEGEFSLRGAIMDIFSFGASEPLRVEFFGDTVTSLRQFDINSQLSGKTLSSATITAA
FTPGETDAAETATILDYLPPSAIILIDDHTEFLAMENHEELAGALKEFTTVRRGAASGEA
IDFHAASQQKINANFRLFATLLHQKAATAGTPVFAASSQREIRELNDFLAEEMAETGKGS
AAEPIWVPLNLHSGFSFGPLDLYTESDIFGKLHSHRSSRKRKIRGISLGDLQKLKVGDFV
VHEDYGIGRFKALETITAGNSEQECVLVEYEGGDQLFVNVQNINLLSKYAASESSTPVLS
KLGSSKWAARKEKVRNKLRDIAINLIKLYAQRKMQPGFAFGPDSIFMREFEASFIFDETP
DQHKAIEELKKDMQAPHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQAAILTPTTILAH
QHAETFARRFENFPITIAVLSRFVPRAEQKETLKKIAAGTVDIVIGTHRLVSKDVQFNDL
GLLVIDEEQHFGVEVKEKLREQFPGVDTLTMSATPIPRTLQFSMLGARDLSIVSTPPKNR
QPVETLITDYDAELIETAIRREINRDGQVFFLHNRVAGLEEMQRTIRELVPSARIVYAHG
QMPARELEKIMMDVMQKEVDVLISTTIIGSGLDISNANTIIINRADMFGLSDLYQLRGRV
GRSERKAYCYLITPPLHTLKREAVQRLAVIESFTELGSGFSIALRDLDIRGAGNLLGAEQ
SGYIHELGFDLYQKMLEETVAGLKSTEFSHLFSGDAKPPAPTGTCDLVFFCDALIPEHFI
TATHERFGFYEKISKARKAESLDTLHKELRDRFGPLPEEVEHLLLLAKLKITASPLGIEK
IELQAKTITFVLPGEESGEPLNREFLQHLFTAVQQPEMQPYNPGFSFDKKMKLTLHHPKS
EASSSPSALIEHYTNLLHQLADSAKEEQAEAL
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcatgaaaatatagtttaccgccctcttatgaaaacaatatcggatacggaccttcac
agtgccccgctgaaaagaaagaatgcgggattccttattgaaaccctccgtcagtcagag
cccttcaggaaacttctttcagcactcaagacccctgcctctccccgacagaaagcaata
gatattgccggcatccacggctcgcttgcgccactcctctcaactgccattcatgcagcc
accgatgaagtcgttgtgatactggcggcgcagagcagctttgagctctatcttcacgac
ctgccctcacttgtttcaggcaacacaaccttcaatacatccgatgaactcccggctgcc
attgaggccctccggaaaaaaacccgccccctcatcctgtcgctgcaaagcgaactcctg
gcgccactctgcagcccacccgaatcggaacaccgcatgttccccattgctgtcgacatg
gagtgcggatatgagcgtatcaggcagttccttacagagaacagtttcgagcagagggac
tttgttgagaatgaaggcgagttttcactgcgcggcgcaatcatggatatattttccttc
ggagcatccgagccgctgagggttgagtttttcggagacacagtcacctctctgcgccag
ttcgacatcaacagccagctctcaggcaaaaccctttcatccgccaccatcactgccgca
ttcacacccggcgaaacagacgcagccgaaacagcaacaattcttgactatctgcccccc
tcggccatcattctcattgacgaccatacggaatttcttgcaatggaaaaccacgaggaa
cttgccggggcgcttaaagagttcaccactgtccgccgcggcgccgcctcaggagaagcc
attgattttcatgcagccagccagcagaaaatcaacgcaaatttccgtctcttcgccacc
ctgctgcaccagaaagcagcaactgcgggcactccggtctttgctgcctcgtctcagcgg
gaaatcagggagctgaatgactttcttgccgaagagatggctgaaaccggcaaaggaagt
gcagccgaaccgatctgggttcccctcaacctccacagcgggttcagcttcggaccgctc
gacctctataccgaatccgacatcttcggaaaactccactcccacagaagcagccggaaa
cgcaaaatcaggggcatttccctgggagacctgcagaagctcaaagtcggcgacttcgtg
gtacatgaagactacggcataggccgcttcaaggcgcttgaaaccataaccgcaggaaac
tccgaacaggagtgtgtactggttgaatatgagggcggcgaccagctttttgtcaatgtg
cagaacatcaacctcctctcaaagtatgccgcttcggaaagctccacaccggttctctcc
aagctcggcagctcgaaatgggcggcacggaaagagaaagtccgcaacaaactgcgcgac
atagccatcaacctcatcaagctctacgcccagagaaaaatgcagccgggatttgctttc
ggccccgactccattttcatgcgtgaattcgaggcttccttcatttttgatgagaccccc
gaccagcacaaggcgattgaagagctgaaaaaagacatgcaggcaccccacccgatggat
cggctcatctgcggcgacgccgggttcgggaaaacggaaattgccatgcgggcagccttc
aaggcggtggaatcaaaaaaacaggcggcaattctcacccccacaaccattcttgcccac
cagcatgccgaaacctttgcccgaaggtttgaaaacttccccatcaccatagcagtacta
agccggtttgtgccaagggcggagcaaaaagaaacccttaaaaaaattgcggccggaacg
gtggatattgtcatcggcacccaccggctcgtctcaaaagatgtgcagttcaatgacctc
ggccttctcgtcattgacgaagagcagcacttcggggttgaagtcaaggagaagctgcgc
gaacagttccccggagtcgacaccctcaccatgtcggccacacccattcccagaaccctc
cagttctcgatgctcggcgcccgcgacctttccattgtctccacacctccaaaaaaccgt
cagcctgtcgaaaccctcatcaccgactacgacgcagagcttattgaaaccgctatccgc
agggaaatcaaccgtgacgggcaggtttttttcctccacaaccgggttgccggcctcgag
gagatgcagcgaaccatcagagagctggtaccttcagcacgcattgtctacgcccatggg
cagatgcccgcgcgcgaacttgaaaaaataatgatggatgtcatgcagaaagaggtcgat
gttctgatttcaaccaccatcatcggctcagggctcgacatatcaaacgccaacaccatc
atcatcaaccgcgccgacatgttcggcctgtcggacctttatcagcttcgcgggcgggta
ggaagaagcgagagaaaggcatactgctacctcatcaccccgccccttcacaccctcaaa
cgggaagccgtccagcgccttgcagtcatagaaagcttcaccgaactcggctcaggcttc
agcatagcgcttcgcgacctcgacatccgtggcgcaggcaaccttttaggagcagaacag
tccggctacattcatgagctcggattcgacctctaccagaaaatgcttgaagaaacagtt
gccggtctgaaatcaacagagttcagccacctgttttccggtgacgccaaacctccagcc
cctaccggcacctgtgaccttgttttcttctgtgatgccctcatccccgaacacttcatt
acagcaacccatgagcggttcgggttctatgaaaaaatatcgaaagcacgcaaggcagag
agcctcgacaccctccacaaagagctcagagaccggttcggcccacttcccgaagaggta
gaacacctgctgctgctcgcaaaactgaaaataaccgcctcaccgctcggcattgaaaaa
atagaactgcaggcaaaaaccatcaccttcgtcctgccgggagaagaaagcggggaaccc
ctgaaccgggaattcctgcagcacctgttcaccgcagtacagcagcctgaaatgcagcca
tacaaccccgggttcagctttgataaaaaaatgaaactcacccttcaccaccccaaatcc
gaagcatcctcttccccctcagcgctcattgagcactacaccaaccttcttcatcagctt
gcagattccgcaaaggaagagcaggccgaagctctttga
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