Chlorobium phaeovibrioides: Cvib_1189
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Entry
Cvib_1189 CDS
T00499
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pvi
Chlorobium phaeovibrioides
Pathway
pvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cvib_1189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvi03019
]
Cvib_1189
03009 Ribosome biogenesis [BR:
pvi03009
]
Cvib_1189
Enzymes [BR:
pvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cvib_1189
Messenger RNA biogenesis [BR:
pvi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cvib_1189
Ribosome biogenesis [BR:
pvi03009
]
Prokaryotic type
rRNA helicases
Cvib_1189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ABP37201
UniProt:
A4SFE2
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All DBs
Position
complement(1336532..1338328)
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AA seq
598 aa
AA seq
DB search
MSDDKNISISSFTDLNLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGK
TAAFALPILSNIDFSATEPQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYG
SQLRMLKRGVHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQ
TPSDRQVALFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGGSHKIDIL
TRILEVEPFDGMIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGAL
NIVIATDVAARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNM
LSSIERATRKKIELMELPSTEIINDKRIAKFKQRITDTIAAEDLAFFTRLVEQYCHEHDV
AEVEAAAALASMVQGDTPLLFTAKPAKAERPVRREMGERSRDDAPFRKKARRDDMYGDER
REVYRIEVGSGHGVQAGNILGAIINEIGLDPEAIGRISIGDDYSTVELPSGMPNDVMHDL
RKVRVCGRQLRVSKMESRDSAGAYAGVGKGAKRPSRFPGKSSSKDAGFFTGPKKRRKI
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgacaaaaatatatctatcagcagttttactgacctgaatctggcagagccc
gtccttcgggccttggccgatgtcggttatgaaacccctacccctatacaggcccgaacc
ataccactgctcattgagggtcgtgatgtgcttgggcaggcacagaccggaacaggcaag
acagccgctttcgctttgccgatactttccaatattgacttttcagctacggaaccgcag
gtgctggtacttgctcctacccgggagcttgccattcaggtggccgaggcttttcacaag
tatgctgaacaccttaaggggttccatgtgcttcctatctatggtggccaggagtatggc
agtcagcttcgcatgctgaaacgcggcgtccatgttgttgttggtacccccggcagagtg
atggatcatatgcgcaaaggttcgctcaatctgcactcgctgaagtgcctggttcttgac
gaggctgatgaaatgcttcgcatgggtttcattgatgatgttgagtggatacttgagcag
acgccttctgatcgccaggtagcgcttttttctgcaaccatgcctgctcccatccggcgc
atagcgcagaaatacctgaatgatcctgcggaagtcactattcaggctaaaacgacaaca
gtcgacactatacgccagcgctactggattgttggtggcagtcataagattgacattttg
acaaggattctggaggtagagccttttgatgggatgattatttttgtcagaaccaaaacc
atgacgcttgagattgctgaaaaactgcaggcaagaggttacagtgccgcggctctcaac
ggcgatatggttcagcagcagcgtgagcggacaattgatcagctgaagtcgggggcgctt
aatattgttattgctactgatgttgctgcccgtggtcttgatgttgagcgaatcagtcat
gtcatcaactatgacattccttccgatacggaatcatatgtccaccggattggccggacg
ggtcgtgcaggtagaagcggtgaggcaattctgttcgtttctcccagagagaggaacatg
ctttcctccattgaaagagctacccgcaagaagatagagctgatggagcttccttccaca
gagatcatcaacgacaagcggatagcaaaattcaaacagcgcattactgataccattgct
gccgaggatcttgcattttttacccgtcttgtggagcagtactgccacgaacatgatgta
gctgaggttgaggctgctgcagcacttgcgtccatggttcagggtgatacccctctgttg
tttaccgccaaaccggcaaaggctgagaggcctgtccgtcgcgagatgggtgagcggtcg
agagatgatgctcctttccgcaaaaaggcccggcgggacgacatgtatggcgatgaacgg
agagaggtctatcggattgaggtaggcagcggacatggagttcaggctggcaatattctt
ggtgccatcatcaatgaaatcggtcttgatcctgaagccataggccgcatttcaatcggt
gatgattacagtaccgtcgagcttccttccgggatgcccaatgatgtgatgcatgatctg
cgcaaggtacgggtgtgcggccgtcagctcagggtttccaaaatggagtcgcgcgactct
gccggagcatatgcaggtgttggcaaaggtgcaaagcgcccatcaaggttcccgggaaaa
tcatcatcaaaagatgccgggttctttacgggtcctaaaaagcgacgcaagatctga
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