Pseudomonas viridinivis: AABC73_03915
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Entry
AABC73_03915 CDS
T11794
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pvii Pseudomonas viridinivis
Pathway
pvii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AABC73_03915 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvii03400
]
AABC73_03915 (recD)
Enzymes [BR:
pvii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AABC73_03915 (recD)
DNA repair and recombination proteins [BR:
pvii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AABC73_03915 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_16
SLFN-g3_helicase
AAA_17
AAA_28
TraI_hel_assoc_N
AAA_5
PhoH
NTPase_1
AAA_25
nSTAND3
DEAD
T2SSE
NACHT
Motif
Other DBs
NCBI-ProteinID:
WZF12277
LinkDB
All DBs
Position
874173..876272
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AA seq
699 aa
AA seq
DB search
MSRSFAELLPTPLDAQSLADLAPLTKVSDLLLLLERWVERGWLRALDKAFVAFLSELDPA
ADSRVLLAAALTSHQLGHGHVCLDLFETLKEPDFALSLPPEGDAQGGPMLLPSQLLVALD
GEAWCQALLGSALVARGDDQSESAARRPLVLSDRRLYLRRYWAYERRIDMALRQRLAQQE
AAPADLAQRLDGLFGPADPAPDALIDWQKLACALATRGAFSIITGGPGTGKTTTVVRLLA
LLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQSLDVSEDVRQKIPSEVTTVHRLL
GSRPGTRHFRHHSGNPLPLDVLVVDEASMIDLEMMANLLDALPPHARMVLLGDKDQLASV
EAGAVLGDLCRDAEAGFYSPQTQAWLEAISGENLNDSGLQQGDALQHPLAQQVVMLRHSR
RFGQGSGIGQLSRLVNQQQAEAARALLAARSHGDLFALALKGEQDHSLERLLLDGHSQGN
EGPQGYRHYLGVMAGQRPPVDAALEDECWSRWARAVLEAFDAFQLLCAVRKGPWGVEGLN
RRITSALFSAGLIEGDQHWYEGRPVLMTRNDYGLGLMNGDIGIALRLPERDGVEATKHVL
RVAFPRNDGSGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELV
YTGITRAKHWFSLIEPRQGVFEEALRRKVKRLSGLMLGV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgagccgttcattcgccgaactgttgccgacgccgctggacgcgcaaagccttgctgac
ctcgcgccgttgaccaaagtcagcgacctgctgctgttgctggaacgctgggtcgaacgc
ggctggttgcgggcgctggataaagccttcgtggcgtttctcagtgagcttgatccggcg
gccgattcacgagtgctgttggccgccgcgttgaccagtcaccagttgggccacgggcat
gtttgcctggacctgtttgaaaccctgaaagagccggacttcgcgctgtcgctgccccct
gaaggtgacgcccaaggcgggccgatgttgctgccgtcgcagctgttggtcgcgctggac
ggcgaagcctggtgtcaggcgttgctcggcagcgcgttggtcgcacgcggcgatgatcag
agtgaaagtgccgcgcgcaggccgttggtgttgtccgatcggcgtctgtacctgcgccgt
tactgggcttacgagcgacgcatcgatatggctttgcggcaacgactggcacagcaggaa
gccgcgcctgcggatctggcgcaacgtcttgatggcttgttcgggccggccgatcctgcc
ccggatgcattgatcgactggcagaagctggcctgtgcattggcgactcgtggcgcgttc
agcatcattaccggcggtcccggcaccggcaaaaccaccacggtggtgcggttgttggcg
ttgttgcaagcgccagccgtgcaaagtggtcagccgctgcgtattcgtctcgccgcgcca
accggcaaggcggcggcgcgcttgaccgaatccatcagccagcaggtgcaatccctggat
gtcagcgaagacgtgcggcagaaaatccccagtgaagtgaccacggtgcaccggctgttg
ggcagtcgaccgggcacgcgccacttccgccaccactcgggcaatccgttgccactggat
gtgttggtggtcgatgaagcgtcaatgatcgatctggaaatgatggcgaatctactcgac
gccctgccgcctcacgcgcgcatggtcttgcttggtgacaaggatcagttggcctcggtg
gaagccggcgcggtgctgggggatttgtgtcgcgatgccgaggcgggtttttacagcccg
caaacccaggcgtggctggaagcaatcagtggtgaaaacctgaacgacagtggcctgcaa
caaggcgatgcgctgcagcatccattggctcagcaagtggtgatgttgcgtcattcgcgg
cgcttcgggcagggcagcggcattggtcagctgtcgcgcctggtcaatcagcagcaggcg
gaagcagcgcgggcgttgttggccgcccgcagccacggcgatctgttcgcgcttgcgctc
aagggtgagcaggatcattccctggagcggctgctgctcgacgggcacagccagggcaac
gaaggcccgcaaggttatcggcattatctgggcgtgatggccgggcagcgtccgccagtg
gacgctgccctcgaagatgaatgctggagccgctgggcgcgcgcggtgctggaagcgttc
gatgcgttccagttgctgtgcgcggtgcgcaaagggccgtggggtgtcgagggtctgaat
cggcgcatcaccagtgcgctgttcagcgccgggctgatcgaaggcgaccagcattggtac
gaaggccgcccggtattgatgacccgcaatgattacggcctgggcctgatgaatggcgat
atcggcatcgccttgcgcctgccggagcgcgatggcgtcgaagccaccaagcacgtgttg
cgtgtggcgtttccgcgtaatgacggcagcggcggggtgcgcttcgtcttgccgagtcgg
ctcaacgatgtggaaaccgtgtacgccatgacggttcacaaatcccagggttcggagttc
gcccacaccgcgctgatcctgccggaagcgctgaacccggtgctgaccaaggagctggtc
tacaccggcatcacccgcgccaaacactggttcagcctgatcgaaccgcgtcagggcgtg
tttgaagaagcgttgcggcgcaaggtgaagcggttgagcgggttgatgttgggggtttga
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