Pseudomonas viridinivis: AABC73_28390
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Entry
AABC73_28390 CDS
T11794
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pvii Pseudomonas viridinivis
Pathway
pvii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AABC73_28390 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvii03021
]
AABC73_28390 (rho)
03019 Messenger RNA biogenesis [BR:
pvii03019
]
AABC73_28390 (rho)
Transcription machinery [BR:
pvii03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AABC73_28390 (rho)
Messenger RNA biogenesis [BR:
pvii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AABC73_28390 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WZF11413
LinkDB
All DBs
Position
complement(6080900..6082159)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTIRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatctgctcgaaatggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggatgtcattttctccctgctgaaa
aagcacgccaagagtggcgaggaaatttccggtgatggcgtgctggagatcctccaggac
ggcttcggtttcctgcgctctgcagacgcttcctatctcgccggcccggacgatatctac
gtctcgcccagccagatccgccgcttcaatctgcgtactggcgacaccattgtcggcaag
atccgtccacctaaggaaggcgagcgttatttcgctctgctcaaggtcgacacgatcaac
tacgaccgtccggaaaacgcgaagaacaagattcttttcgaaaacctgacgccgttgttc
ccgaccatccgcatgaagatggaagccggtaacggttccaccgaagatttgaccggccgt
gtgatcgacttgtgcgcaccgatcggcaaaggccagcgcggcctgatcgttgcaccgccc
aaagcgggcaagacgatcatgttgcagaacatcgcggccaacatcacgcgtaacaatccg
gaagtgcatctgatcgttctgctgatcgatgagcgcccggaagaagtaaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgacgaaccgccaacccgtcacgta
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtc
gttatcctgctcgactccattacccgtctggctcgcgcctacaacaccgtcattcctagc
tccggcaaggtcctgaccggtggtgtcgatgcccacgccctggagaaaccgaaacgtttc
ttcggcgccgcgcggaacatcgaagaaggcggctcgctgaccatcatcgctaccgcgctg
gttgaaaccggctcgaagatggatgaagtgatctacgaagagttcaagggtacgggcaac
atggagctgcctctggatcgcaagatcgcagagaagcgcgtgttcccggcgatcaacatc
aaccgctccggtacccgccgcgaagagttgctgaccgccgacgacgaactgcaacgtatg
tggatcctgcgcaaactgctgcacccgatggacgaagtcgcggctatcgagttcctgatc
gacaagctgaagcagaccaagaccaacgatgagttcttcctgtcgatgaagcgcaaataa
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