Panicum virgatum (switchgrass): 120639112
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Entry
120639112 CDS
T07260
Name
(RefSeq) BTB/POZ and MATH domain-containing protein 1-like
KO
K10523
speckle-type POZ protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120639112
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
120639112
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Gene cluster
GFIT
Motif
Pfam:
BACK_BPM_SPOP
MATH_2
BTB
MATH
PRIMA1
VIR_N
DUF4843
CR_prot_dom_plant
Mito_fiss_reg
Motif
Other DBs
NCBI-GeneID:
120639112
NCBI-ProteinID:
XP_039771084
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All DBs
Position
6K:15877905..15879347
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AA seq
379 aa
AA seq
DB search
MASRSPRMRTASTSTVETVKGTHSFKITDYRLHKELSTDKCFCSAIFAVGSHNWRIRYYY
EGQDPREDYVSVFIELSGDLVEVTASFELRMVNPVTGLSSPRNISSPVVFNGENPTRGFA
IFVKKDDLEFSSKYVVDGCLVIECDVMVIKEIQVKETTVTSDFDIQPPPPPPPPPPPPAD
LSHDLRRLLESEEEADVTFKVKGEVYHAHKILLAMGSPVFKAEFYGPMSDNMGDESKTVE
GMDPIIVFKALLHFIYTDSFPVMEDLDCDEKEDMVKHLLVAADTYGMERMKLICEGILCK
RIDVESVAYTLALAAQHHCIKLKNACIEFIISRNRMDAVLASQGYEHLKRACPDVAVELW
EKAAKSFMTRSGSNYEVLS
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccggagtccaaggatgaggacggcgtcgacatccaccgtggagacggtgaag
ggcacgcactcgttcaagatcaccgactacagactgcacaaggaactcagcaccgacaaa
tgcttctgctccgccatcttcgcggtcggcagccacaattggcgtatccgctactactat
gaaggacaggatcccagagaggattatgtctccgtcttcatcgagctctcaggtgatctt
gtcgaggtgacggcaagcttcgaattaaggatggtcaacccagtgacagggctgtcatcg
ccgcgcaatatctcctcgccggtggtgttcaacggtgaaaatccgacccggggtttcgcc
atattcgtgaagaaggatgacctggaattctcatcgaaatacgtggtagatggctgcctc
gttatagagtgcgatgtcatggtaatcaaagaaatacaggtgaaggagacaaccgtcacc
tccgactttgatatccagccccccccccccccccccccccccccccccccccccgcagac
ttatcacacgaccttagaaggctgctagagtcagaggaggaagcagatgtaacattcaag
gtaaaaggggaggtttaccatgcccacaagattctgctcgcgatggggtcgccggtgttt
aaggcggaattctatggcccgatgagcgacaacatgggggatgagagcaagacagtcgaa
ggtatggaccctattattgtcttcaaggcattgcttcatttcatatatacagatagcttt
cctgttatggaagatcttgactgcgacgagaaagaggatatggttaagcacttgctcgtg
gcagcagacacatatggcatggaaaggatgaagttgatttgtgaaggcatcctttgtaag
aggatcgatgttgaaagtgttgcatataccttggctctggctgcccagcaccactgcatc
aagcttaaaaacgcatgcattgaatttatcatctcccggaatagaatggatgctgtgtta
gcaagccaagggtatgagcacctcaagagagcatgccctgatgttgctgttgaattatgg
gagaaagcggcaaagtcttttatgacgagatcagggtcaaattatgaagtgctatcttag
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