Panicum virgatum (switchgrass): 120639560
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Entry
120639560 CDS
T07260
Name
(RefSeq) zinc finger CCCH domain-containing protein 24-like
KO
K15332
tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120639560
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
120639560
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_32
zf-CCCH
Ubie_methyltran
MTS
Methyltransf_15
RRM_1
Methyltransf_11
Methyltransf_4
PCMT
AviRa
PrmA
AAA_34
Motif
Other DBs
NCBI-GeneID:
120639560
NCBI-ProteinID:
XP_039771348
LinkDB
All DBs
Position
7K:2658025..2665817
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AA seq
852 aa
AA seq
DB search
MEDATTPPSQPELVGEKRKREEGSPDAAAEDAPAASGEDAAGGGRHPMWKTSLCSFFRRR
GAGAEGCSHGESCRYAHTEEELRPRPDGTWDPTSDRAKKLRKVAAEAQEEAEEEVTVDEQ
SLDKCLVGLPRGWTADRIKTFLQDQGILYATAKKKKGMTVGFVTFESVEQLTHAVQVLKE
NPSGGKEIKISDANRRSHQKVRAEGHVANGTATENGSNPATTAGETSAPEVVASSKKSAR
DAVTPLAHMPYNDQLEHKKHSMAQILKRLTRNARKACPPAIPLPNWIFKSKEIGGLPCKL
EGILESPIVDGYRNKCEFSVGYSLEGKKTVGFMLGNFREGVTAVEEPVNCPNVSEISCKY
AQMFQDFLQSSSLPLWSRVDNCGFWRQFTVREGRCPAEAVVLQHVESQISEVMLIVQVCS
TDVDEALMKEEFDKLSTALIQGASTCSPPLPLTTIVVQDHKGISNAAPADCPLIPLLVPK
GDQLEGRAEDKTRIHDHISNLKFSISPTAFFQVNTLAAERLYTLAGDWANLNSDTLLFDV
CCGTGTIGLTLAHRVGMVVGIEMNESAVSDAHRNALINGIKNCRFVCGKAEDVIGSLLTE
YLGSPQQHIAASESNSVINDTSKNEDTINCTESDVENMDSSAEKNDNGENEQPRDGSVDL
HTCGDEDIKGDSVDRVNKEADSSPDEHIEAVVEQSCGEASLINDEPTDAISTDSLEHGKT
CQDSSSIQNNNVLAASACQFKNVVAIVDPPRVGLHPTVIKALRMHPLIRRLVYISCNPDS
LVANAIELCTPTSEKQEKNKGNRGWRSMSAAGLARQRTKSMPNSEPFIPKRAMAVDLFPH
TSHCEMVMLFER
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccacgacaccgccgtcgcagcccgagctcgtcggagagaagcgcaagagg
gaggaaggatcgccggatgcggctgccgaagacgcgccagccgcatccggcgaggacgcg
gccggcggcggccgccacccgatgtggaagacgagcctgtgctcctttttccgccgccgc
ggcgccggcgccgaagggtgcagccacggggagtcctgccgctacgcgcacaccgaggag
gagctccgcccgaggcccgacggcacctgggaccccacctccgaccgcgccaagaagctc
cgcaaggtcgccgcggaggcccaggaggaggccgaggaggaggtaacggtggatgagcag
tcgctcgacaagtgccttgttggccttcccaggggctggacggctgataggatcaagacc
ttcctccaagaccagggaatcttgtatgcgacagcaaagaagaagaagggaatgacagtt
ggttttgtgacttttgaaagtgtcgagcaattaacacatgctgttcaggtcctcaaggag
aatccttctggtggaaaggaaataaagatatctgatgctaatcgtaggtctcaccagaaa
gtccgtgctgaagggcatgttgctaatggaactgcaacagaaaatggtagtaatcctgct
actactgctggggaaacatctgcacctgaagtggttgcctcaagtaaaaaaagtgcccgt
gatgctgttactccccttgcccatatgccttacaatgatcagctagaacataaaaaacat
tcaatggcacaaatactgaagagacttactcgcaatgctaggaaagcttgcccacctgcc
attccccttcctaattggatttttaaatcaaaggaaattggtggtcttccttgcaagctc
gaaggcattttggagtcccccattgttgatggataccgtaacaagtgcgagttctctgta
ggatattccttggagggcaagaagacagtaggctttatgcttgggaatttcagggaaggt
gtgactgctgttgaggagcctgtgaactgcccaaacgtctcagaaatttcctgtaaatat
gctcagatgttccaagattttctgcagtcatcaagcttgcctttgtggagtcgagttgat
aactgtgggttttggcgccaattcacagttcgtgagggaaggtgtccagcggaagctgtt
gttttacaacatgtggaatcacaaatatcagaagtcatgcttattgtgcaggtgtgttca
acagatgttgatgaggctctaatgaaagaagagtttgacaagctgtccactgccctgata
caaggcgcctcaacgtgctcacctccattgccactaacaactattgtagtgcaagatcat
aaaggaatatcaaatgctgctcctgctgactgtccgctgatcccactattggtgccaaag
ggagatcagttggaaggcagagcagaagataaaacgagaatccatgatcacattagcaat
ttaaagttctccatatcaccgactgcttttttccaggttaatactcttgctgcagaaaga
ctgtatacccttgctggtgattgggccaatctcaattcggacacattactttttgacgta
tgttgcgggactggaactattggtctaaccttagcacatcgtgttggaatggttgtcggg
attgaaatgaatgaatcggcggtttcagatgctcacagaaatgctcttattaatggcata
aaaaattgccgctttgtctgtggcaaggctgaagatgtgatcgggtcccttctcacagaa
tatcttggttcaccacagcaacacattgcagcttctgaaagtaattctgtgatcaatgat
acaagcaaaaatgaggatacgatcaattgcacagagagtgatgttgaaaatatggacagt
tcagcagagaaaaatgacaatggtgaaaatgagcagcctagagatggatcagttgatctt
cacacttgtggtgatgaggatataaagggagattcagtggatagggttaacaaagaggct
gattccagtcctgatgagcacattgaggccgttgttgaacaaagttgtggggaagcatca
ttgatcaatgacgagcccactgatgcaatatcaactgatagtttggagcatggcaagaca
tgccaggatagttcttcgattcaaaacaacaatgtgcttgctgctagtgcatgtcagttc
aaaaatgttgttgccattgtggaccctccacgtgttggccttcaccctactgtgatcaag
gcattgaggatgcatccactcattcgacgtctagtgtacatttcctgcaatccagatagc
ctagtcgccaatgcgatcgagctgtgcaccccaacatctgagaaacaggaaaagaacaaa
ggcaaccgaggatggcgatcaatgagcgctgctggtcttgctaggcagcggacgaagtcc
atgccgaactctgagccttttatccccaagagggcgatggcggtggatctgtttcctcac
acctcgcactgcgagatggttatgcttttcgagaggtga
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