Panicum virgatum (switchgrass): 120639598
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Entry
120639598 CDS
T07260
Name
(RefSeq) SWI/SNF complex subunit SWI3D-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120639598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120639598
03036 Chromosome and associated proteins [BR:
pvir03036
]
120639598
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120639598
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120639598
PBAF complex
120639598
GBAF(ncBAF) complex
120639598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
120639598
NCBI-ProteinID:
XP_039771401
LinkDB
All DBs
Position
7K:3801946..3810535
Genome browser
AA seq
906 aa
AA seq
DB search
MEPKPSPPPAATPRRRGAATKRKERVASAALPASPPPKRQARERARVDPPPLPPPPPPPP
VPRSRPAASKSRRKPARKKAPRCSVNPPREQQQQQEEEAQAPSPSPPRASLEQEIEAVLS
RGAGVHVVPTFAGWFSWKEIHPIEKQMLATFFDGKSERRTPEIYLGIRNSIMRKFHFNPE
VHLEKTDLSELSIGEMDARLEILEFLAHWGLVNFHPCPPVAQDCKLIESKSSADTAEEIS
LIEKLFQFETVHSYLVPVSKKAEIIAPVQFTSFLSQPKLAEDAITAAESSVEYHCNSCSV
DCSRKRYHCRTQVDFDLCSDCYNEGKFDEGMSKADFILMEYAEVPGSSGSNWTDQETLLL
LEALEIFKGKEWDEIAEHVATKTKEQCMLYFLQMPIFDSFLDGEDINETPQKITEQDSAE
TGTLGVPEDMDVGDNAEGKESADENTCKKANANSSETGTKIADQSVSAKVNTMNLGDNDL
VSSSIVDESNKSSFMDPANKKKSTDADVSEEQASDFVSGVLRSTFEAVGHFPGKDDLGSF
AEAGNSVMALAGFLASLVECDDAVTSCCSSLRAISAISPALQLATGHCFILPDPPSNLKD
LTSNYSSCTGGECQGGADGTQNVNDTDKDSSKREESALTLEKEVASPKECLELSNTEESF
VEGPQAEVKSNSTKDPDNPTDASDKMRDGCNTIPGSAASNNTNEPGSVTSQEASAASANA
TTNREQLEGEKLSSKELPDDDSPSQGRVVPKEIECAPMASSSMQQHKSNQTGSGNTEEPN
SNKNIAAAAAADPIIRLQRAAVTAISAAAVKAKFFVEQEEGHIRQLAELVIEKQFQKMET
KMSFLAEVENLVLRSRELTEKMRKKLLLERNAIMASRMAAAASRINQRWAPEARLPVALV
RQLRHP
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaaaccctcgccgccgccggccgccacgccgcgccgccgcggggcggcgacc
aagcgcaaggagagggtcgcatccgcggcactccccgcgtccccaccgccgaagcgccag
gcccgggagcgcgcccgcgtcgacccgccgcccctcccgcctccgccgccgccgccgcct
gtaccgcgcagccgccctgccgccagcaagtcgcggcgcaagcccgctcggaagaaagcg
ccgcgctgctccgtgaatccgccgcgcgagcagcagcagcagcaggaggaggaggcgcag
gcgccgtcgccgtcgccgccaagggcgtcgcttgagcaggagatcgaggccgtcctgtcc
cgcggcgccggcgtccacgtcgtccccaccttcgccggatggttttcatggaaggaaatt
cacccaattgagaagcaaatgttggctacattttttgatgggaaatcagagagaaggaca
cccgagatatacttgggaattaggaattcaatcatgagaaaatttcactttaatcctgaa
gtgcatctggagaaaacagatttgtctgagttgtcaattggggagatggatgctcgtctg
gaaatcttggagttcctggctcactggggcttggttaatttccatccttgtccaccagtt
gcacaggactgcaagctaattgagagcaaaagtagtgctgatacagcggaggaaatttct
ctgattgagaagctatttcagtttgaaacagttcattcatatctggtacctgtttcgaag
aaagctgaaatcatagccccagttcagtttactagcttcctttctcagcctaaactagct
gaagatgcgataactgcagctgagtcttctgttgagtatcattgcaactcctgctcagtt
gattgttccagaaagcgctatcattgtaggactcaggtagactttgatttgtgttctgat
tgctacaatgaaggaaagtttgatgaaggcatgtcaaaagctgatttcatccttatggaa
tatgcagaggttcctggctccagtggttctaactggactgaccaggagacattgcttctt
ttggaagctttggaaatttttaaaggaaaagaatgggatgagattgctgagcatgttgct
acaaaaacaaaagaacagtgcatgctgtacttcctccagatgccaattttcgattccttt
ctagatggtgaagatatcaatgaaacacctcagaagatcacagaacaggattcagcagaa
actggcactttgggtgtacctgaggatatggatgtaggtgacaatgcagaaggaaaagag
agcgctgatgaaaacacttgcaagaaagcaaatgctaattcttcagaaaccggaacaaaa
atagctgaccaaagtgtctctgctaaagtgaataccatgaatttaggtgataatgatctt
gtttcatcttccatagttgatgaatcaaacaaatcttcattcatggatcctgcaaataag
aaaaaatcaactgatgctgatgtatctgaggagcaggcatccgactttgtttctggtgtc
ctgagatctacttttgaagctgttggccactttccgggtaaagatgacttgggttcattt
gctgaagcaggaaattctgtgatggcactagctggatttttggcctctcttgtggaatgt
gatgatgctgttacttcatgttgtagttcattgagagctatatcagcaatttctcctgct
ctccaattggcaactgggcactgttttattcttccagatccaccgagtaacctcaaagat
ctgacttccaattacagctcttgcacaggcggtgagtgccaaggaggcgctgatggtact
caaaatgtaaatgatactgataaagatagcagtaaaagggaagaaagtgctttaactctg
gaaaaggaggttgcctcaccgaaggagtgtctggaattatccaacacagaggagtcattt
gttgaaggtccccaagcagaggtcaaatccaacagcacaaaggatccggataatccaact
gatgcatctgataagatgagagatgggtgtaataccattcctggttctgctgcttcaaat
aatacaaatgaacctggttccgtaacttcccaagaagccagtgcagcaagtgcaaatgcc
acaaccaaccgtgaacagttagaaggggaaaaattaagttctaaagaattaccagatgat
gactcaccttcacaagggagggtagtgccaaaggagattgaatgtgcacctatggcctcg
tctagcatgcaacaacacaagtctaaccaaacaggaagtggcaacactgaagaacctaac
agcaacaaaaacattgctgctgctgctgctgcggatcccataataaggctacagcgagct
gcagttactgcgatttcagcagctgcagtgaaggctaagttcttcgtggagcaggaggaa
ggtcatatccggcaactagctgaacttgtgatcgaaaagcagtttcagaagatggaaact
aaaatgtcgtttctcgctgaagttgaaaatctggtcctgcgatcgagagaattgacagag
aaaatgcgtaagaagcttttgctggagcggaatgcgataatggcttctcgaatggctgct
gctgcatccagaataaaccagcgttgggctcctgaggctcgactgccagtagccctggtt
cggcagctgaggcacccttga
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