Panicum virgatum (switchgrass): 120639921
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Entry
120639921 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase makorin-like isoform X1
KO
K15687
E3 ubiquitin-protein ligase makorin [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120639921
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120639921
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120639921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Torus
zf-C3HC4
zf-RING_2
zf-CCCH_3
RING_XB3-XBAT31
zf-RING_5
zf-CCCH_DUS3L
zf-CCCH_2
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_4
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
120639921
NCBI-ProteinID:
XP_039771774
LinkDB
All DBs
Position
1K:complement(49105395..49109793)
Genome browser
AA seq
365 aa
AA seq
DB search
MSKRVPCKFFLHGACYKGDYCEFSHDCNDRPDNVCTFYQKGACSFGSRCRNEHVEIHRNR
PQPATTAAHVSSNSSQLVASSGGPHCSECQTDQCDQTQQICKSTTTHSAQQPAWADDYHE
HDTPGDANSWPSDQAVENQTSQHPAHMPLCSSAAAGTCPYGKDCSQMHGDLCTFCEKQCL
HPHRPDESGLHVELCKKNNRLLEALRKSEDIECGVCLDRVLSKPMAAERRFGLLSDCDHS
FCISCIRNWRSTSPTSGMDVNSTLRACPICRKLSYYVVPSTTWYSSKEEKQEIIEGYKAK
LRSIDCKHFDFGKGTCPFGSSCFYKHAYRDGRLEEALLNHNDADGARAAIARLMRLSYLL
TRLHV
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagggtcccttgcaaattcttcttgcatggagcttgctacaaaggagattac
tgtgaattctcccatgactgcaatgatcgaccagataatgtttgcacattttaccagaaa
ggtgcatgctcctttggtagccgttgcagaaatgaacatgttgaaattcatcggaaccgc
ccccaaccagcaaccactgcagcacatgtatcctccaattcttctcagctagtcgcttct
tctggaggtcctcattgcagtgaatgccaaacggatcagtgtgaccaaacacaacagata
tgcaagtctacgacaacacattctgcacaacaacctgcatgggcagatgattatcatgaa
catgacactccaggggatgccaacagctggccatccgaccaagctgtggaaaaccaaaca
tcgcaacatcctgctcatatgccactttgctcttctgctgctgctggcacttgcccttat
gggaaagactgttctcagatgcatggagatctatgcacattctgtgaaaaacaatgcttg
catcctcatcgtcccgacgaaagtggtttgcatgtcgagctatgcaagaaaaacaacaga
cttcttgaggccttgagaaaaagtgaagacattgagtgtggtgtgtgcttggaccgtgtg
ctctcaaaacctatggcagcggaaaggaggtttgggctgctgtctgactgtgaccattcc
ttctgtatctcatgcattagaaattggcgtagtacctctcctacatctggcatggatgtc
aactctacactcagggcttgtccaatatgccgcaaactgtcatactatgtagttcctagc
actacgtggtactcctcaaaggaagaaaaacaggaaatcattgaaggctacaaggctaag
ctcaggtctattgattgtaagcactttgacttcggaaagggcacttgtccctttgggagc
agctgtttttacaagcatgcctacagagatggccgtttggaagaggctttactgaatcac
aatgatgctgacggtgcaagggcagcgattgccagacttatgaggttgtcgtacctactg
actcggctgcatgtctag
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