Panicum virgatum (switchgrass): 120640236
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Entry
120640236 CDS
T07260
Name
(RefSeq) septin and tuftelin-interacting protein 1 homolog 2-like
KO
K13103
tuftelin-interacting protein 11
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120640236
Spliceosome [BR:
pvir03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120640236
Other components
Complex C specific factors
120640236
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Motif
Pfam:
GCFC
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
120640236
NCBI-ProteinID:
XP_039772027
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Position
7K:39220005..39221795
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AA seq
596 aa
AA seq
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MDADERRDASYVDENRSRASARWGTGGNSAPAPRSGADYSRPPQKRPRGSGDLPKLVHFV
SAGVPSGNHGDSRSPAAASSGNPVPKATSPPAPGSLASNTVVAKMMKRMNYREGTGLGRH
GQGIVAPLEVILRPKNAGLGSAEGFAGGDFEPPPSAEDWPAWDEAGGAKKRKRHREFDEK
IILARPLEEGAAEAVARVHKALARASRWSSGQGELCYGEATAEIAKAMERVREQSSSGTL
TTAELTREFTALKERCPREYTTYRLEDAARAIAAPLLRAAVFQQWEPLEDPSRGLEAVTG
LKGALLDDGSAASPYAALVDDVVVGSVLASAAETWEARDPAPMVRFLETWRDALPLPATQ
RLLEQAVMPKLSAAVESWEPRWEPVPCHAWVRPWIPLLRRRRLEPLLATVRRKLGEALPG
WHAARAAADYDMVLPWKDAFGPAAWEEFVGRHVVPYLRRGLRAVRVTPPKQEDGGFGGVM
RWLSVVPARDMARLLEEGFLGKWQDALCRWLWTARPTVAEATAWHQGWKRLLTPELLADE
RVRVPIEAGLQKISRAAQGLEIYRPPGWEQHAGQANSWRYRSRRRAVFSRGGNRHW
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgacgagcggcgcgacgccagctacgtcgacgagaaccgcagccgagctagc
gcacggtggggaacgggcgggaactccgcgcctgcccctcgctccggcgcagactacagc
cgtccgccgcagaagcgaccgcgcggctccggcgatctccccaagctcgtccatttcgtc
tccgcgggcgttccgtccggtaaccatggggattctcgtagtcccgccgcagcgtcgtct
gggaatccggttccgaaggccacgtcgccgccggcgcccggcagcctggcgtccaacacg
gtggtggcgaagatgatgaagcgcatgaactacagggaaggcacggggctcggcaggcac
ggccaggggatcgtcgctcccctcgaagtcatcctgcggcccaagaacgccggcctcggc
tccgccgagggattcgccggcggagatttcgagccgcctcccagcgcggaggactggccc
gcgtgggatgaagccggaggagcaaagaaacggaagcgccatcgggagtttgacgagaag
atcatcctagcgagaccactggaggaaggcgccgccgaggccgtcgcgagggtgcacaag
gcactcgcccgggcgtctcgatggtcgagcggccaaggggaactgtgctacggggaggcg
actgcggagatcgccaaggccatggagcgggtgcgggagcagagctcgtcggggacgctc
acgacggccgagctgacccgcgagttcacggccttgaaggagcggtgcccccgggagtac
acgacgtaccgcctcgaggacgcggcgcgcgcgatcgcggcgccgctgctgcgcgcggcg
gtgttccagcagtgggagccgctcgaggacccgtcgcgcgggctggaggcggtgaccggg
ctcaagggcgcgctgctggacgatgggtcggccgcgtcgccgtacgccgcgctggtcgac
gacgtcgtggtggggtccgtgctggcgtcggccgccgagacgtgggaggccagggacccg
gcgccgatggtccggttcctggagacgtggcgggacgcgctgccgctcccggcgacccag
cgcctcctggagcaggcggtcatgccgaagctgtccgccgccgtcgagtcgtgggagccg
cggtgggagcccgtgccgtgccacgcctgggtgcgcccgtggatcccgctcctcaggcgc
cggcggctcgagccgctgctggcgacggtgcggcgcaagctcggggaggcgctgccggga
tggcacgcggcccgcgccgcggccgactacgacatggtgctgccgtggaaggacgcgttc
gggccggcggcgtgggaggagttcgtcggccggcatgtcgtgccgtacctgaggcggggc
ctgcgggcggtgcgcgtcacgccgccgaagcaggaggacggcgggttcggcggcgtgatg
aggtggctgtccgtggtgccggcgcgggacatggcgcggctcctggaggagggtttcctc
ggcaagtggcaggacgcgctgtgccggtggctgtggaccgcgagacccacggtggcggag
gccacggcgtggcaccaagggtggaagcggctgctgacgccggagttgctcgccgacgag
cgcgtgcgtgttcccatcgaggccggcctccagaagatcagccgcgcggcgcaaggtctg
gagatttaccggccgcctggatgggagcagcacgccggccaggccaactcctggcggtac
agatcacggcggcgcgcggtgtttagtcgtggaggcaataggcactggtaa
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