KEGG   Panicum virgatum (switchgrass): 120640264
Entry
120640264         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120640264
  09124 Replication and repair
   03420 Nucleotide excision repair
    120640264
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120640264
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120640264
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120640264
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120640264
SSDB
Motif
Pfam: RNA_pol_Rpb4 DUF2240
Other DBs
NCBI-GeneID: 120640264
NCBI-ProteinID: XP_039772054
LinkDB
Position
1K:complement(49420601..49424409)
AA seq 219 aa
MDRVPNGKHKGSVNRPVVLDSSDSDSDSEGFVEELTPVHSKPNGKASSGSLKTGGKGSSF
SKGKASQGKAYSGGKGGKGSSSNVVPTKSDAELKLELDIPPNSKMLMNCEAAELLQEIHE
HMAILSEDPKIKIPESFDKAFQYAKDGNHFRTAGSVKQALEPLKKCGVNDGEICMIANIG
PETVEEVYALMPSLKANRSVNEGPITEVLATLANIKAVK
NT seq 660 nt   +upstreamnt  +downstreamnt
atggatcgagtaccgaatggaaagcacaagggttctgtcaaccggccagttgtgctcgat
tcatcagattctgactctgactctgaaggttttgtagaagagcttactcctgttcattcc
aagccaaatgggaaggcttcatctgggagcctaaaaactggtgggaagggttcgtctttc
tctaaaggaaaagcaagccaaggaaaggcatacagtggtggcaaaggtggaaagggctct
tcatcaaatgtagtgcctactaagtctgatgcagaactaaagctggagcttgatatccct
ccaaactctaagatgctaatgaattgtgaagcagctgaactgttgcaagaaattcatgag
catatggctatcttatcagaggatcccaaaatcaaaattcctgagtcatttgacaaagct
ttccaatatgcaaaagatggaaaccatttcagaactgctggctctgtaaaacaagctctg
gaaccacttaaaaaatgcggtgttaatgatggtgagatatgcatgatagcaaacattggg
ccagagaccgttgaagaggtctatgcactgatgccatctctcaaggccaataggtcagtt
aacgaaggtccaatcactgaagttcttgctactctcgccaacataaaagcagtcaagtga

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