Panicum virgatum (switchgrass): 120640305
Help
Entry
120640305 CDS
T07260
Name
(RefSeq) 26S rRNA (cytosine-C(5))-methyltransferase NOP2B-like
KO
K14835
25S rRNA (cytosine2870-C5)-methyltransferase [EC:
2.1.1.310
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120640305
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.310 25S rRNA (cytosine2870-C5)-methyltransferase
120640305
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120640305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
RsmF-B_ferredox
Methyltr_RsmF_N
TRM5-TYW2_MTfase
Motif
Other DBs
NCBI-GeneID:
120640305
NCBI-ProteinID:
XP_039772088
LinkDB
All DBs
Position
1K:49460916..49466408
Genome browser
AA seq
721 aa
AA seq
DB search
MAKKGPKSKLQPPPAPTGKKRGKAAPPPKAAKRVPKKQMLLESDDDSDTEQQQLQEEDSD
LDIHSDSDAEELSGSDAEADELSGSDADADGGSSSGSGDEGEEDEEEEEGDDGSDDEPLA
DDFLADSDEGSESGDSGVESDDSDDLEAKSRAIDEQRLKAEIDAVEDLKTNIRSESDEFR
LPTAEELEEEAHLPPNLPNLKRRISEIVRVLSNFNKLRQKDVPRKDYLNQLKTDIISYYG
YNDFLVEALIEMFPAVELVELLEAFEKKPPECLRTNTLKTRRRDLAAALIPRGFNLDPIG
KWSKVGLVVYDSTISAGATTEYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKT
TYIGALMKNTGIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGINSVDRV
LLDAPCTGTGTIWKDPQIKTSKDIEDIRNCAFVQKQLLLAAIDLVDANSKTGGYIVYSTC
SIMIPENEAVIDYALKKRNVKLVPCGLDFGRPGFIRYREHRFHTSLDKTRRFYPHVNNMD
GFFVAKLKKLSNTIPVTSESSKASEGAAEKADLSGDDEDKKAVSDEQEKGVPDKDEKAVP
MKNHKDTKKTNKGTSVAEETKGVPDRPAKHPKNHKKDAMETDGPESTETNGDGKEVHLEQ
TKKKGPQRKFASDRTKELGPKSTSGIKEKKPVSDKKRKKKWQFKLRRDWEAGKKSDKRRK
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaggggccgaagagcaagctgcagccgccgccggcgcccacggggaagaag
aggggcaaggcggcgcccccaccgaaggcggcgaagagggtgcccaagaagcagatgctt
ctcgagtccgacgacgactcagatacggagcagcagcagctccaggaggaggactccgac
ctcgacatacactccgattccgacgccgaggagctctctgggtcggacgctgaggccgat
gagctctcaggctcggacgccgatgctgacggtggctccagcagcggcagcggcgacgag
ggggaagaggatgaagaggaggaggagggagatgatggtagcgatgatgaaccccttgcg
gacgacttcctcgctgatagtgacgaaggaagcgagagtggtgactctggagtggagtct
gatgattctgatgacctcgaggccaagtcacgagcaattgatgagcagaggctgaaggca
gaaatagatgcggttgaggaccttaaaacaaacataagatcagaatctgatgagttcaga
ttaccaacggccgaggaactggaggaagaggcgcatttaccacctaacctaccaaatctc
aaaaggaggatatcagaaattgtccgagtgctctcaaacttcaacaagctgaggcagaaa
gatgtcccacgaaaagattatctcaatcagctcaaaactgacatcatttcatactatgga
tataacgattttcttgttgaagcattgattgagatgtttcctgctgtcgagcttgttgag
ttgctggaagcttttgagaaaaaaccacctgagtgcttgcgaacaaatacgttaaagacc
aggaggagggatcttgctgctgctcttataccaagaggatttaatctggacccgataggc
aaatggtcaaaagtaggattagttgtctatgactccaccatttctgcgggtgcaacgact
gaatatatggctgggcattacatgaaacaaggtgcaagttctttcttaccagtgatggca
cttgctccccaggagaaggagcgaattgttgatatggcagctgccccaggtggcaagact
acttatattggtgctcttatgaagaatactggaatcatctatgcaaatgagttcaatgag
aaaaggttgcacggactgttgggaaacattcatcgcatgggtgtgacaaataccatagtt
tgtaactatgatggtaaagagttacctaaagttctcgggataaattcggttgacagagta
ttgctggatgctccctgcacaggaactgggaccatttggaaggatccacaaataaaaaca
tcaaaggacattgaagacatcaggaactgtgcctttgttcagaagcaattgctgcttgct
gctattgatttggttgatgccaactccaaaactggtggttacattgtttactcaacttgt
tcaataatgatcccggagaacgaggcagtgatagactacgcacttaaaaagagaaacgta
aagcttgtgccttgtgggttggattttggacgcccaggattcattcggtaccgggagcat
cggtttcatacttcgttagacaaaacaagaagattttatcctcatgttaacaatatggat
ggattttttgtggctaagctgaaaaagttgagcaatacgattcccgtgacgtctgagtcg
tcaaaagcatctgaaggtgcagctgagaaggctgatcttagcggggatgacgaagacaag
aaagctgtttctgatgaacaagagaaaggtgtccctgataaagatgagaaagctgtacca
atgaaaaatcataaagatactaagaagactaataaaggaacaagcgtcgcggaagagact
aaaggtgtacctgataggccagcaaagcatcctaagaaccataagaaggatgcaatggaa
actgatggccctgaaagcacggaaacaaatggagatgggaaagaagtgcaccttgagcaa
accaaaaagaaaggcccccaaaggaagtttgcttctgatagaaccaaagaattaggcccc
aagagcacctcgggcataaaagagaaaaaaccagtgagtgacaagaagcgaaaaaagaag
tggcaattcaagctgaggcgagactgggaagctgggaagaagtctgacaagaggaggaaa
gtatga
DBGET
integrated database retrieval system
