Panicum virgatum (switchgrass): 120640426
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Entry
120640426 CDS
T07260
Name
(RefSeq) rhamnogalacturonan I rhamnosyltransferase 1-like isoform X1
KO
K23280
rhamnogalacturonan I rhamnosyltransferase [EC:
2.4.1.351
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
pvir01003
]
120640426
Enzymes [BR:
pvir01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.351 rhamnogalacturonan I rhamnosyltransferase
120640426
Glycosyltransferases [BR:
pvir01003
]
Polysaccharide
Structural polysaccharide
120640426
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
O-FucT
Motif
Other DBs
NCBI-GeneID:
120640426
NCBI-ProteinID:
XP_039772180
LinkDB
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Position
1K:49594133..49598005
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AA seq
547 aa
AA seq
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MVCKAAMGIKAAAKLRCPPSVAAAARSRLTPWMLRATTTVLLWTCVVQLTTVGNTWGPRV
LKGWPSCRTAREAAAAAAAATTRLAMPEPVVVVEKAALPPKRIYRNNGYLMVSCNGGLNQ
MRAAICDMVVIARYLNVTLIVPELDKTSFWNDPRFVYFSQIFLSPIFFLEPLVDFILLLK
CNIVMQTSFSPCFSEFQDIFDTEHFITSLRDEVRILRELPPRVKRRVELGKFHSMPPISW
SDISYYHKQILPLIQKYKVLHLNRTDARLANNGLPLEIQRLRCRVNYAALKFTPQIEELG
KRVIRILRQNGPFLVLHLRYEMDMLAFSGCTKGCTPKEAEELTRMRYAYPWWKEKVINSF
VKRKDGLCPLTPEEIALVLRALGIDQNMQIYIAAGEIYGGKHRMASLTSAYPNVVRKETI
LKPSDLMFFQNHSSQMAALDYLVSLESHIFVPTYDGNMAKVIEGHRRYMGFKKTILLDRK
LIVELVDQYTSGSLRWDEFSSLIKAVHANRMGSAATRTVIPDRPKEEDYFYANPQECLRD
PNLLRTS
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggtctgcaaggcggcgatggggatcaaggcggccgcgaagctccggtgcccgccttcg
gtggccgccgcggcgcggtcgcgcctgacgccgtggatgctgcgcgccaccacgacggtg
ctgctctggacctgcgtcgtgcagctcaccaccgtggggaacacctgggggccccgcgtg
ctcaaggggtggccgtcgtgccggacggcgcgggaggcggccgctgccgccgcggccgcc
accacgcggctggcgatgccggagcccgtcgtggtcgtggagaaggccgcgctgccgccc
aaaagaatttacagaaacaatggttatttgatggtttcatgcaatggcgggcttaaccaa
atgcgagccgctatatgcgatatggttgtaattgcaagatatttgaatgtgactttaata
gtccctgagttggataagacatcgttctggaatgacccgaggtttgtttacttttcgcaa
attttcctttcccccattttctttcttgaaccattagtggattttatactattattgaaa
tgcaatatagttatgcagacctcgttttctccttgtttcagcgaatttcaagatatattc
gatactgaacattttataacatctcttagagatgaggttcgtatacttagagaattgcca
cccagagtaaagagaagagtggaattagggaaatttcactcgatgcctcctatcagttgg
tcggatatctcttactaccataagcagattcttcctttgattcagaagtacaaggtcctc
catctgaatagaactgatgctaggttggcaaataatggtctgcctctggagatccagaga
ttgcgttgcagggtgaattatgctgcactgaaatttacgccccaaattgaagagttagga
aagagagtaattagaatactccgtcaaaatggccccttcttagttcttcatttacgatat
gagatggacatgcttgctttctctggctgtactaaaggctgcacccctaaagaagctgag
gagcttacaagaatgaggtatgcttacccatggtggaaagagaaagtaataaactctttt
gtgaaaagaaaagacggtctttgccctttgaccccagaggagattgctcttgtccttaga
gcattgggcattgaccaaaacatgcaaatatatatcgcagctggtgagatatatggtgga
aagcacagaatggcttctcttacctcggcttaccctaacgtggttcggaaggagacaatt
ctgaaaccttctgatctcatgttctttcagaaccattcatcacaaatggcagcactggac
tacttggtatcactggaaagtcacatttttgttccaacatatgatggcaacatggctaaa
gtcatcgagggccaccgcaggtacatgggcttcaagaaaacaatcttgttggatcgaaaa
cttatagttgagctggtagatcagtatactagtggatctttgcggtgggatgagttctct
tcattgatcaaggctgtccatgccaaccgtatgggatcagctgccaccaggacagtgatc
ccggacagacccaaagaagaggactacttctatgccaaccctcaagaatgcctgcgagat
cccaatctgcttcgaacatcgtga
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