Panicum virgatum (switchgrass): 120640487
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Entry
120640487 CDS
T07260
Name
(RefSeq) oligoribonuclease-like isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120640487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120640487
03009 Ribosome biogenesis [BR:
pvir03009
]
120640487
Messenger RNA biogenesis [BR:
pvir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
120640487
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
RNases
120640487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-GeneID:
120640487
NCBI-ProteinID:
XP_039772263
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All DBs
Position
7K:complement(20618709..20622245)
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AA seq
144 aa
AA seq
DB search
MGPDLVIRQSKECLDGMNEWCQVHHVASGLAEQVLKSEISEHDAEKRVLDFIKRYIGSAT
PLIAGNSVYMDLLFLKKYMPQLAGIFSHVIVDVSSITALCSRWFPKEKKAAPRKEKNHRA
LDDIRESIKELQYYRENIFKSRRS
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgggtccagacttggttataagacagagtaaggaatgtttagatggcatgaatgaatgg
tgtcaagtccatcatgtggcaagtggactggcagaacaagtactaaagagtgagatttct
gagcatgatgcagagaaacgagtgttagactttattaagaggtatataggttctgctact
ccattgatagctgggaattccgtctatatggatttactatttttgaagaagtatatgcca
caacttgcaggcatattctctcatgtgatagttgatgtgagcagtataacagcattgtgc
agccgctggttcccgaaagaaaagaaagctgctccaagaaaggagaaaaaccatagagca
ttggatgatatcagagaaagcatcaaggagctacaatactacagggagaacattttcaag
tcacggagatcttag
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