KEGG   Panicum virgatum (switchgrass): 120640606
Entry
120640606         CDS       T07260                                 
Name
(RefSeq) cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120640606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120640606
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120640606
Spliceosome [BR:pvir03041]
 Complex B
  Other components
   Prp19 complex
    120640606
 Complex C
   Prp19-CDC5 complex
    120640606
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    120640606
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 TPR_HPS5_insect
Other DBs
NCBI-GeneID: 120640606
NCBI-ProteinID: XP_039772431
LinkDB
Position
7K:24884824..24890813
AA seq 981 aa
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPNDDPR
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFYDTVGEDKPPEHVQFPT
TIQDLEGKRRVDIEAQLRKQDIARNKILQRQDAPAAIMQANKLNDPEAVTRRSKLMLPPP
QISDHELEEIAKMGSAGDPALADELGEGSTATRALLSSYSQTPRLGMTPLRTPQRTPAGK
GDAIMMEAENLARLRESQTPLLGGDNPDLHPSDFSGVTPRKKEIQTPNPMATPLALASPG
PGVTPRVGMTPSRDGNSFGITPKATPFRDELRINEEVELQDSAKLELRRQAELRKSLRSG
FASIPQPKNEYQIVMPPITEDEKEEAEERIEEDMSDRLARERAEEQARQEALLRKRSKVL
QRSLPRPPAASVEILRQSLIRGGESRSRSTFVPPTSLEQADDLINEELLRLLEHDNAKYP
LDEKTQKEKKKGNKRQANAAAVPEIEDFDEGELKEASSLVQEEIQYLRVAMGHENESFED
FVKAHDACQEDLMYFPTNNSYGLASIAGNADKISALQNEFEIVKKRMDEEAKKASRLEQK
IKLLTQGYQVRAGKLWLQVQDTSKQMDTAATELECFQELQKQEQLAASYRVRNLTAEVNK
QKALERTLQSRYGDLMSVYHRIQEQLEEHKIQIRKQEAIEAENRAGEEAAAQNRAAEEEN
ESVEMGKEHMNSITDEEPAPAGSKQINEDQMDVDNTNVDGEFVGPIPPAPDTQGDVVEAS
VQENSSNAPSTNGVTTNGEACDMVDASNVESQDNTSGSLLVDAGNQEDGKNSIPLVGASE
RNTALSSDDAVTNEQNDMVPE
NT seq 2946 nt   +upstreamnt  +downstreamnt
atgaggatcatgataaagggcggcgtgtggaagaacacggaggacgagatcctcaaggcg
gccgtcatgaagtacggcaagaaccagtgggcgcgcatctcgtcgctgctcgtccgcaag
tccgccaagcagtgcaaggcgcgctggtacgagtggcttgacccgtccatcaagaagact
gaatggacaagggaagaggatgagaagctactccatcttgctaaactcatgcctacgcaa
tggaggacaattgcacctattgttggtcggacaccatctcaatgcctagagcgttatgag
aagcttcttgatgctgcttgtgcaaaagatgagaattatgaacctaatgatgacccgagg
aagttgcgacctggtgagattgatccaaatcccgagtcaaaacctgctcgtcctgatcct
gtcgatatggatgaagacgaaaaggagatgctttctgaggcaagggctcgattagctaac
accaggggtaaaaaggctaaacgaaaagcaagagagaagcaacttgaagaggctaggcgg
cttgcttcactgcaaaaaaggagagagctgaaggcggctggcattgatacacggcagagg
aagagaaagaggaagggtattgattacaatgctgagatccctttcgaaaagagaccgcct
ccaggcttttatgatacggttggtgaggacaagccacctgagcatgtgcagtttccaact
actattcaggatcttgaagggaagcggagagtggatatagaggcacaattgagaaagcaa
gacattgccaggaacaagattctgcagcggcaagatgccccagctgcaataatgcaagcc
aataaactcaatgaccctgaagcagtcacaagaaggtccaaactaatgcttccaccacca
caaatttctgatcatgagttagaggagatagcaaagatgggtagtgctggtgatcctgct
ctagctgatgagcttggcgaaggaagcaccgccacgagagccttgctatccagctattcc
cagacaccaaggcttggtatgacaccattgcgaactccccagagaaccccggctggtaag
ggtgatgctattatgatggaggcagaaaatcttgcacgtttgagggagtcacaaacacct
cttttaggaggggataacccagatcttcatccatcagatttctctggtgttacaccacgt
aagaaggaaatacagactccaaaccccatggcgacacccttggcattggcaagccccggt
cctggtgtgaccccacgggttggcatgacgccttccagagatgggaattcctttggtata
actccaaaagctacaccctttcgtgatgagctccgcataaatgaagaggtggaattgcag
gacagtgctaagcttgagcttcgtagacaagctgagctaagaaagagtctgcgatctggt
tttgcttctattccacagcctaagaatgagtaccagatagttatgccacctatcactgaa
gatgaaaaggaagaagctgaagagagaattgaagaggatatgtcggacaggctagcgaga
gagagggctgaggaacaagcaaggcaggaggcattgcttagaaagagatccaaagtgttg
cagagaagtctacctaggccacctgctgcctcagtagagattctccggcagtctctaatt
agaggtggtgagagcagaagcagaagtacctttgtgcctccaacatcacttgagcaggct
gatgatctaataaatgaggaactccttaggctccttgagcatgataatgctaaatacccc
cttgatgaaaaaactcaaaaagagaaaaagaaagggaacaagaggcaggcaaatgcagct
gcggttcctgaaattgaggattttgatgagggtgaattaaaagaggctagttctttggtt
caagaggagattcagtatcttcgtgtggccatggggcatgaaaacgaatcttttgaggat
tttgtgaaagctcatgatgcgtgccaagaggaccttatgtattttcctacaaacaacagc
tatggtcttgccagtatcgctggaaacgctgataagatatccgctttgcaaaatgagttt
gaaattgtgaagaagagaatggatgaggaagctaagaaggcttctcgtctggagcagaag
atcaaacttctgacacaagggtaccaggtacgggctgggaaactgtggttgcaggtccaa
gacacatccaaacagatggatactgctgcaacagaacttgaatgcttccaagagctccag
aaacaggaacagttggcagcttcctaccgtgtcagaaacttgactgcagaagtgaataaa
cagaaagctttagaaagaacactccaaagccgctatggtgatttgatgtctgtttaccat
agaatccaagaacagcttgaggaacacaagattcaaattaggaaacaggaggcaatagaa
gcagaaaatcgtgctggagaggaggctgcagcacagaatcgtgctgccgaagaagaaaat
gaaagtgttgaaatggggaaagaacatatgaacagtattactgatgaggagcctgcccct
gcaggaagcaagcaaatcaatgaggatcagatggatgtggacaacactaacgtagatgga
gaatttgttggtcctattcccccagcaccagatactcaaggggatgtcgttgaggcttct
gttcaagagaactcttctaatgctccgagtactaatggcgtcaccacaaatggtgaagca
tgcgatatggttgatgcatccaatgtagaaagtcaggataataccagtggcagtttgctc
gtggatgctggcaatcaggaagatggcaagaatagcattccactggttggtgccagcgaa
agaaatactgctttatcctcggatgatgctgtcacaaatgagcagaatgacatggttcct
gagtga

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