KEGG   Panicum virgatum (switchgrass): 120640673
Entry
120640673         CDS       T07260                                 
Name
(RefSeq) WD repeat and HMG-box DNA-binding protein 1-like
  KO
K11274  chromosome transmission fidelity protein 4
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pvir03036]
    120640673
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Other sister chromatid cohesion factors
    120640673
SSDB
Motif
Pfam: Mcl1_mid WD40_WDHD1_1st WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Ctf4_C EIF3I eIF2A Beta-prop_WDR35_TULP_N Beta-prop_RIG_2nd WD_LRWD1 WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_ELP1_1st Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 120640673
NCBI-ProteinID: XP_039772512
LinkDB
Position
7K:26670886..26676388
AA seq 1010 aa
MKGRAVKLREAHKSGSPALCSAAWGPCGRHVVTASAADTAVLVHDAAALLAGGRVSGLAP
LATMRLHKDGVTAVAVAPGPGGSLASGSIDHSVKFYTFPEGEFLSNVARFTLPIRSLSFN
KKGTLLAAAGDDDGIKLIATIDNTISKVLKGHKGSVTGLDFDPRNDYLASVDSFGTVIYW
DLCTGNVARTLTRVAPTFHSDNSVRNVLCWSPDGQTLAVPGLRNNVVLYDRDTGEEVSTL
KGDHEQPVCSLCWSPNGRYLASAGLDRQVLVWDVKSKQDIERQKFDERICCLAWKPDGNS
LLMIDVMGRFGIWESVIPSTMKSPTEGIPDFKSTKVSLFDDDDDIDDDDEKPCTSGGLED
DIDESLCDSTLFSHKRLKRKSAFNGDSEDEDLIHQLESSKRMKDKHKDTKEDAGKARGDS
ATSGRLVNERMQAAFQPGSTPPQPGMRNFLAYNMLGSITTIENEGHSHVEVDFHDTGRGP
RVPSMTDYFGFTMAALNESGSVFANPCKGDKNMSTLMYRPFDSWAGNSEWSMRFEGEEVK
AVALGAGWVAAVTSLNFLRIFTEGGLQVHILSVSGPVVTAAGHGDQLAIVSHASDCLPSG
DQVLDVKVFNISERAQTFSGRLLLTPSSQLSWFGFSDNGQLSSYDSKGILRVFSSQFGGS
WLPVFSSVKARKSEDESHWVVGLDANNVFCILCKQPQSYPQVMPKPVLTILELSFPIASS
DLGANSLENEFMMRKLHLSQTRNKIDEMAALGLDTTAYDDEEFNLEAGLDRCILRLISSC
CSGDKLIRATEFAKLLTLEKSMKGALTLVTRLKLPMLQEKFSAILEERMLNDRKIAEAAS
FCSNATITRNPAVLTTHATVPTKFVQNGNSSLESSLPIQSLGNQESSLIELKKPEGEQAR
GINKSSLKVSPAFTPLAKVPKSNETKKDSIGASNASVVDQNKKGGIDGAKKMSTEDCDRT
EPQRPINPFSKSSASKEHSPSLLDSIKRMKVETEKVEKPSSKVKVQVQKK
NT seq 3033 nt   +upstreamnt  +downstreamnt
atgaaagggcgcgcggtgaagctccgtgaggcgcacaagtcaggctcgccggctctctgc
tccgccgcgtggggcccctgcgggcgacatgtcgtcaccgcgtccgccgccgacaccgcc
gtcctggtccacgacgccgccgcgttgctcgccggcggccgtgtctcgggtttggcgccg
ttggccacgatgcggctccacaaggacggcgtcactgctgtcgcggtcgcgccgggcccc
ggaggctcgctggcatccggatccatcgaccactccgtcaagttctacacctttccagag
ggagaattcttgagcaatgtcgcccgattcacccttcctatccggtcactttcgttcaac
aagaaggggaccctgctggcggccgcaggcgacgacgatggcatcaagctgattgcgaca
atcgacaacaccatctccaaggtgctcaaaggccataagggctccgtcaccgggctggat
ttcgaccccaggaacgattacctggcttctgtggacagcttcggcactgtcatttattgg
gatctttgcaccggcaatgtggcccgtaccttaacccgcgtcgctcccacattccattcg
gataattcggtcaggaatgtcctgtgttggagccctgatgggcagacccttgctgttccc
gggttgaggaacaatgtggtgctgtatgatagggacacgggcgaggaggtgtccacactg
aaaggagatcatgagcagccagtgtgcagcctatgctggtctcctaatgggagatacctg
gccagtgctggcctggataggcaggtgctcgtctgggatgtgaagtcaaagcaggacatt
gagagacagaagtttgatgagaggatatgctgcttggcctggaaaccagatggaaattct
ttacttatgattgatgtcatgggcaggtttggcatttgggaatcagtcataccttcaact
atgaagtcacctactgagggtataccagacttcaagtccactaaagtttctttgtttgat
gatgatgatgacattgatgatgatgatgagaagccgtgtacctctggtggcttggaggat
gatattgatgaaagtctttgtgattcaactcttttcagccacaagagactgaagaggaag
tccgcatttaatggagacagtgaagatgaggatttaattcatcaattggaatcatccaaa
agaatgaaagataagcataaagatacaaaggaagatgctgggaaggcaagaggtgattct
gcaacttcagggaggcttgttaatgaaagaatgcaagctgccttccagcctggatcaaca
ccgcctcagcctggcatgcgaaatttcctcgcctacaatatgctgggtagtatcactacc
attgaaaatgaggggcattcgcatgtagaggttgactttcatgacacaggaaggggccct
agagttccttccatgacggactattttggtttcacaatggctgcactgaacgaatcagga
agtgtctttgcaaatccatgcaaaggtgacaagaatatgagcactctaatgtaccgccct
tttgatagctgggctggtaacagtgagtggtcaatgagatttgagggagaagaagtgaag
gctgtggctcttggtgctgggtgggttgctgcagtcacaagcctaaattttttgcgcatt
ttcacagaaggaggcttgcaggtgcatatcctatcagttagtggcccagttgttacggca
gcaggtcatggggatcagctagctattgtatctcatgcttccgattgtctgccctcagga
gatcaggtgctggatgttaaggtattcaacatatctgaaagagcacaaacattttctggc
cgccttcttttgactccatcgtcccaattatcctggtttggattcagtgataatggtcaa
cttagttcatatgattccaagggaatactaagggtcttttccagtcagtttggcggaagt
tggcttccagtatttagttcggtcaaggcaagaaaatctgaagatgaaagccattgggtg
gtaggtctggatgctaataatgtattttgcattctatgcaaacaacctcagtcttaccca
caggtgatgcccaagcctgtgctaaccatactcgagctgtcatttcccattgcttcatct
gaccttggtgctaatagtttggaaaatgagttcatgatgaggaagctacatctgtcacag
actcgaaacaagattgatgaaatggctgcattgggtctggacacaactgcatatgacgat
gaagaattcaacttggaggcaggacttgaccggtgcattttgaggctcatatctagctgc
tgcagtggtgataagcttattcgagctactgagtttgcaaaattattgacactagagaag
tcaatgaagggagcactaacactagttacgcgcttgaaacttcccatgctgcaagagaag
ttcagcgccatacttgaggagaggatgttaaacgatagaaaaatagctgaggcagcaagt
ttttgctccaatgctacaatcacaaggaacccagcagtgttgaccactcacgcaactgta
ccaactaagtttgtgcaaaatggaaacagttcattggaatcttcattacccattcagagt
cttggcaatcaagaaagcagtttgattgaactaaagaagccagaaggagaacaggcgaga
ggaattaacaaaagctcccttaaagtttcacctgcctttactccattggccaaagtaccc
aaaagtaatgaaacaaagaaagacagcattggagcatcaaatgcatctgtagtcgatcag
aacaaaaaaggaggcattgatggggcaaaaaagatgagcactgaagactgcgatcgaaca
gagcctcagcgaccaattaaccctttttcaaaatcatcagccagcaaagagcactcacca
tccctattggattccataaaaaggatgaaggttgaaactgaaaaggttgaaaaacctagt
agcaaggtgaaagtgcaggttcaaaaaaaataa

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