KEGG   Panicum virgatum (switchgrass): 120640714
Entry
120640714         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9B-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
pvir03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120640714
  09124 Replication and repair
   03420 Nucleotide excision repair
    120640714
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120640714
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120640714
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120640714
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120640714
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Lep_receptor_Ig
Other DBs
NCBI-GeneID: 120640714
NCBI-ProteinID: XP_039772563
LinkDB
Position
7K:complement(27478867..27482412)
AA seq 114 aa
MSTMKFCRECNNILYPKEDRDRCTIFFACRNCEHQEVSDNNCVYRNEVHHTAGERTQVLQ
DVASDPTLPRTKTVRCALCGHGEAVFFQATARGEEGMTLFFVCCSPDCGHRWRE
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagtaccatgaagttttgccgcgagtgcaacaacatcctgtaccccaaggaggacagg
gacagatgcaccatcttctttgcatgtcgcaactgcgagcaccaggaggtctctgacaat
aactgcgtctatcggaatgaggtgcaccacactgctggggagcgaacacaggtcttgcag
gatgtagcttctgacccaactcttcccagaaccaagaccgtccgctgcgctctctgtggg
cacggagaggctgttttcttccaggctacggcaagaggggaggaggggatgaccctgttc
tttgtgtgctgcagccctgattgcggtcaccggtggagggaatga

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