Panicum virgatum (switchgrass): 120640780
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Entry
120640780 CDS
T07260
Name
(RefSeq) transport inhibitor response 1-like protein Os04g0395600
KO
K27740
protein auxin signaling F-box 2/3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
120640780
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_6
F-box
Motif
Other DBs
NCBI-GeneID:
120640780
NCBI-ProteinID:
XP_039772634
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Position
7K:complement(28948272..28953449)
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AA seq
574 aa
AA seq
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MTYFPEEVVEHIFSFLLSHSDRNTVSLVCKVWYEVERLSRRAVFVGNCYAVRPERVVLRF
PNVRALTVKGKPHFADFNLVPPDWGGYARPWIEAAARSCVGLEELRMKRMVVSDENLELL
ARSFPRFKALALISCEGFSTDGLAAIASHCKLLRELDLQENDVEDHGPRWLSCFPDSCTS
LVSLNFACIKGEVNSGALERLVARSPNLRSLRLNRAVSVDTLSKILARTPNLEDLGTGNL
TDDSESYSRLTRALEKCKMLRSLSGFWDASPICVPFIYPLCHHLTGLNLSYTPTLDYSDL
TKLLSRCVKLQRLWVLDCISDKGLQVVASSCKDLQELRVFPSDFYVAGFSAVTEEGLVAI
SSGCPKLSSLLYFCHQMTNDALITVAKNCPNFIRFRLCILEPKKPDAITNQPLDEGFGAI
VRECKGLRRLSMSGLLTDKVFMYIGKYAKHLEMLSIAFAGDSDKGMMHVMNGCKNLRKLE
IRDSPFGDVALLGNVAKYETMRSLWMSSCNVTLKGCQVLASKMPMLNVEIMNELDGSSEM
EENHGDDLSRVDKLYVYRTTAGARDDAPNFVKIL
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgacctacttccctgaggaggtggtggagcacatattcagcttcttgctgtcgcacagt
gacaggaacacggtctcgctcgtgtgcaaggtttggtatgaggttgagaggctgagccgg
cgagctgtgtttgtggggaactgttacgcagtgcgccctgagcgcgtagtgctgcggttt
cccaatgtaagggcactgacggtgaaggggaagccgcactttgcagacttcaaccttgtg
ccacctgattggggtggctatgcgcggccatggattgaggcagcggcaaggagctgtgtg
gggcttgaggagctacggatgaagcggatggttgtgtcggatgagaaccttgagctgcta
gctcggtcattcccaagattcaaggccctcgcccttatcagctgcgaggggttcagcacc
gatgggctagctgctattgcgagtcactgcaagctcctgagggagttagatttgcaggaa
aatgacgttgaggaccatgggcccaggtggctctcctgcttccctgattcctgcacttcg
cttgtgtccttgaattttgcgtgcatcaaaggggaggtgaattctggcgcactagagaga
cttgttgctaggtctccgaacctacgcagtttgaggttgaatcgtgctgtatcagtagat
acactctccaagatactagcgcgcaccccaaatttggaagacttggggactggtaatttg
acagacgattctgaatcctactcgaggctgactagggcactggagaaatgcaaaatgctg
aggagtttgtcaggattttgggatgcttctcctatttgtgttccttttatctatccccta
tgccatcacctaacaggcctaaacttgagctatactcccacactggattattctgatctg
actaaattgctcagccgctgtgtgaaactccagcgtctttgggtactggattgcatctct
gataagggtttgcaagtggtggcctccagttgcaaagatctacaagaactcagggttttc
ccatcagatttttatgttgctggtttttctgctgtgacagaagagggacttgttgcaata
tcatcaggctgcccaaaactgagctctttgctgtatttctgtcaccagatgaccaatgac
gcactaattaccgtagccaagaactgcccaaatttcataagatttagactatgtatactt
gagccaaagaagccagatgccataacaaaccagccgttagatgaaggcttcggtgcaatt
gttcgtgagtgcaaggggctaagacgactgtcaatgtcaggtcttctcactgataaggtt
ttcatgtatattggaaagtatgcaaaacaccttgagatgctttctatagcatttgctgga
gatagtgataaggggatgatgcatgtgatgaacggatgcaagaatctcaggaagcttgaa
attagagacagtccttttggtgatgttgcactcttggggaatgttgcaaagtatgagaca
atgcgatccctttggatgtcatcatgcaatgtcacattaaaggggtgccaagtccttgcg
tcgaagatgccgatgctcaatgtggagatcatgaatgaactagatggaagcagtgagatg
gaggaaaaccatggtgacgacctctctagagtggataagttatatgtttaccgcacaact
gctggagcaagggatgatgcaccaaattttgttaaaatcctatag
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