Panicum virgatum (switchgrass): 120640842
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Entry
120640842 CDS
T07260
Name
(RefSeq) calnexin homolog 1-like isoform X1
KO
K08054
calnexin
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04141
Protein processing in endoplasmic reticulum
pvir04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120640842
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120640842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pvir03110
]
120640842
04131 Membrane trafficking [BR:
pvir04131
]
120640842
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pvir04091
]
120640842
Chaperones and folding catalysts [BR:
pvir03110
]
Other chaperones and cochaperones
Calnexin / calreticulin
120640842
Membrane trafficking [BR:
pvir04131
]
Endocytosis
Clathrin-mediated endocytosis
Others
120640842
Autophagy
ER-phagy
Other ER-phagy associated proteins
120640842
Lectins [BR:
pvir04091
]
L-type lectins
120640842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calreticulin
CFAP143
Motif
Other DBs
NCBI-GeneID:
120640842
NCBI-ProteinID:
XP_039772697
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All DBs
Position
7K:complement(30022336..30025588)
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AA seq
548 aa
AA seq
DB search
MMGGRALLLLLVSALLVQIRASDPLLYESFDEDFEGRWVVSKKDEYQGVWKRAKSDGHED
YGLLVSEKARKYAIIKELEEPVTLKDGTVVLQFEVRLQNGLECGGAYIKYIRPQEAGWDA
KEFDNETPYTIMFGPDKCGSTNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTA
IMKPDNEVRILIDGEEKKKANFLSADDFEPALIPSKTIPDPDDKKPEDWDERAKIPDPNA
VKPDDWDEDAPMEIEDVEATKPEGWLDDEPEEIDDPEASKPEDWDDEEDGEWEAPKIDNP
KCEEAPGCGEWKRPMKQNPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYFELDKPDFDPI
AAVGIEIWTMQDGILFDNILIADDEKVATFILEKTWKPKYEVEKEKEKAEEAAAAADGLS
EFQKKVFDILYKIADVRFLAPYKTKIIDVIEKGEKQPNITIGILVSVVVVFVTVLFRILF
GGKKPAAPVKPVVEAKKPKATETDGAGSSGDKVEKEDDEKEETGDKVEKEEDEKEETAAP
RRRSRRET
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgatgggagggcgcgcgctgctgctgctgctcgtctcggcgctgctcgttcagatccgc
gcctccgacccgctgctgtacgagtcgttcgacgaggacttcgaggggaggtgggtcgtc
tccaagaaggacgagtaccaaggtgtatggaagcgtgccaagagtgatgggcatgaggac
tatggcctccttgttagtgagaaggccaggaaatatgccataatcaaggagcttgaggag
ccagttactttgaaggatgggacagtagtcctgcagtttgaagtaaggctccagaatggc
cttgagtgtggaggtgcctatattaagtacatccgccctcaggaggctggatgggatgcc
aaggagtttgataatgagactccatacactatcatgtttggtccagacaagtgtgggtca
accaacaaggtgcatttcatccttaagcacaagaaccccaagactggaaagtatgttgag
catcacctcaagtttccgccttctgtcccatatgacaagctgtcacatgtctacacggct
atcatgaagccagacaatgaggtgagaattttgatcgatggggaggaaaagaagaaggca
aacttcctgtctgctgatgattttgagccagcgctcatcccatccaagaccattccagac
cctgatgacaagaagccagaggattgggatgagagagctaaaatccctgatccgaatgca
gtgaagcctgatgactgggatgaggatgccccgatggaaattgaggatgtggaagccacc
aagcctgagggatggctggatgacgagcctgaggagattgatgatcccgaggcaagcaag
cctgaggactgggatgatgaggaggatggtgaatgggaggcaccaaagattgacaaccct
aagtgtgaagaggcacctggatgtggtgagtggaagaggccaatgaagcagaacccagct
tacaagggcaagtggcatgcacccctgattgacaaccccaactacaagggaatctggaag
cctcaggagatccccaaccctgagtactttgaacttgacaagcctgactttgatccaatt
gctgctgttggaattgagatctggacgatgcaggatggcatcctgtttgacaatattttg
attgctgatgatgagaaggttgccaccttcatcctagagaagacctggaagcccaagtac
gaagttgagaaggaaaaggagaaggctgaggaggctgctgctgctgcagatggtctttct
gagttccagaagaaggtttttgacatcctatacaagattgctgatgttcggttcttggca
ccctacaagaccaagatcattgatgtgattgagaagggagagaagcagcccaacatcact
attggcatcttggtttcggttgttgtcgtctttgtgaccgtgctcttcaggatcctgttt
ggtggcaagaagcctgctgctccagtgaaacctgtagttgaggcgaagaagcccaaggcc
accgagactgatggtgctggaagcagcggcgacaaggtggagaaagaggacgacgagaag
gaggagaccggcgacaaggtggagaaagaggaggacgagaaggaggagaccgcagcgcca
cgccggaggtcccgaagggagacatag
DBGET
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