Panicum virgatum (switchgrass): 120640897
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Entry
120640897 CDS
T07260
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23-like
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120640897
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
120640897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
120640897
NCBI-ProteinID:
XP_039772760
LinkDB
All DBs
Position
1K:complement(50052714..50071755)
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AA seq
1611 aa
AA seq
DB search
MDGGHGLRQPMSPAISASAVVPQQRQMQLHHHPARPAIADLFTLYLGMNSKQRADDPSTE
SSNKLQKRVTALNRDLPPRDEQFISDYEQLRMQFPDQEQLQAVTESVLISFVLQCSSHAP
RSEFLLFATRCLCARGHLRWDSLLPSLLNAVSSMEAPVGQGVPVASGGPLTPSSSVLTMP
NAPNFHPSNPASPLSVMNTIGSPTQSGIDQPVGANVSPIKAAEFSSSAQLGTAARGDQSR
RGAEISYLHILSCRILLAGLESNLKPATHAVIFQHMVNWLVNWERPHNMDEADVMQIWKL
EKPLHEWMHLCLDVIWILVNEEKCRIPFYELIRCNLQFLQNIPDDEALVSIIMEIHRRRD
MVCMHMQMLDQHLHCPTFATHRFLSQSYPTIAGESVSNLRYSPITYPSVLGEPLHGEDLA
NSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRSSQQSSTPGAVFSPDMIGE
AVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQIL
RSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKTLDANNIGPQSILLDFI
SSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMIKASGERMIDFTNLDERATGMFW
VLSFTMAQPACEAVMNWFTSAGMADLIQGPNMQPNERIMMMRETYPLSMSLLSGLSINLC
LKLAFQLEEAIFLGQAVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSL
LLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSLKD
FFFVKKELKGPTEFTETLNRITIISLAITIKTRGIAEVEHMIYLQPLLEQIMATSQHTWS
EKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPNYVMTYLSHS
FPQHRQYLCAGAWMLMNGHLDINSANLARVLREFSPEEVTANIYTMVDVLLHHIQFEVQR
GHLAQDLLSKAITNLSFFIWTHELLPLDILLLALIDRDDDPYALRLVISLLEKPELQQRV
KAFCSSRSPEHWLKNQHPKRVELQKALGNHLSWKDRYPPFFDDIAARLLPVIPLIIYRLI
ENDATDIADRVLAFYSSLLAFHPLRFTFVRDILAYFYGHLPIKLIGRILNLLGVSTKTPF
SESFAKYLVSSNSSVCPPPEYFANLLLNLVNNVIPPLSSKSKSTPADTTRSTFNKHHVSS
QPGGIGNNDGQRAFYQNQDPGSYTQLVLETAAIEILSLPVSAAQIVSSLVQIIAHVQAML
IQSNSGQGMSGGLGQSSVLPTSPSGGSAEPSGSNQTNSAASGISATNFVSRSGYSSQQLS
VLMIQACGLLLAQLPPEFHMQLYSEAARVIKDCWWLADSSRPVKDLDSAVGYALLDPTWA
SQDNTSTAIGNIVALLHSFFSNLPQEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPR
LAFARPLFMKTLALLFNVLGDVFGKNSQVPNPVEASEITDIIDFLHHAVMYEGQGGPVQS
TSKPKLEILTLCGKVIEILRTDVQHLLSHLTTDPNCSIYAATHPKLVQNTS
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atggacggggggcacgggctgaggcagccgatgtctccggcgatctcggcctcggcggtg
gtgcctcagcaacggcagatgcagctccaccaccacccggcgcggccggcaatcgccgat
ctcttcaccctatacctcggcatgaactcgaagcagcgagcggatgatccatcgacagag
agctcgaacaagctgcagaagagagtgactgctctgaacagagatctgcctccccgtgat
gagcagttcatttcagattatgagcagctgcgcatgcagttccctgaccaggaacagttg
caagcggtcacagaatcagttctgatctcctttgtgctgcagtgcagtagccatgcacca
cggtctgagtttttgctctttgctacacggtgcttatgtgctcgaggccaccttagatgg
gacagcctccttccatctctgcttaatgctgtttcctccatggaggcgcctgtggggcaa
ggagttcctgtggccagtggtggtcctttaacaccttcttcatcagttcttacaatgcca
aatgctccaaactttcatccttcaaacccagcttcacctttgtcagtaatgaacaccata
ggatcccctactcaatctggtattgaccaaccagtaggcgcaaatgtgtcaccaattaag
gcagctgaattctccagctcagctcagcttggtacagcagcaagaggtgaccagtctcgc
aggggagcagaaattagctatctgcatattctgtcctgtaggatacttttggcagggctg
gagtccaatttgaagccagctacccatgctgtgattttccagcatatggtaaattggctg
gttaactgggagaggccgcacaacatggacgaagctgatgtaatgcaaatttggaagctg
gaaaaacctttacatgaatggatgcatctatgcttggatgttatatggattttagttaat
gaagagaaatgccggattcctttctatgagcttattcgctgcaacttgcaatttctccaa
aacattcctgatgacgaagcattagtcagtataatcatggagatccacaggaggagggac
atggtttgcatgcacatgcaaatgttggatcaacaccttcattgtccaacatttgcaact
catcgtttcttatcacaatcctacccaaccatagctggtgaatctgttagtaatctgcgt
tattctcccattacataccctagcgtcttgggagagccactacatggagaggatcttgca
aactccattcctaagggtggtttagactgggaacgagctctccgttgcttaaggcatgct
ctccgcacaaccccatcaccggactggtggagacgtgttcttctcgttgctccttgttac
agatcatctcaacaatcatcaactcctggagctgttttctcacctgatatgattggtgag
gcagttgctgacaggacaatcgaactcttgaggcttactaactcagagactcagtgctgg
caagattggcttttgtttgccgacatatttttcttcctaatgaaaagtggatgcattgac
ttccttgattttgtggataagcttgcttctcgagtaacaaatagtgaccaacagattcta
cggagtaatcatgtcacttggttgcttgcacagattatccgcattgagattgtgatgaat
actcttagttcagacccaagaaaggttgaaaccacaagaaagataatttcattccataaa
gaagacaagacccttgatgccaataatattggccctcaaagtattcttcttgatttcatt
agtagcagtcagactctgcgcatttggtctttcaatacttcgatcagagagcatttgaac
agtgatcagcttcagaaaggaaaacaaatagatgagtggtggaaacagatgataaaagct
tctggcgagagaatgatagactttacgaacttggatgaacgggcaacggggatgttctgg
gttctctccttcactatggcgcaaccagcttgtgaagcagtaatgaactggtttacatca
gctggaatggcagatttaattcaggggcctaatatgcagccaaatgaaagaataatgatg
atgcgtgaaacttaccctctgtcaatgtcattgctttctgggttgtctattaacctttgt
ctgaagcttgctttccagcttgaagaggctatatttcttggccaggctgtacctagcatt
gctatggtggaaacctatgtgagattactgctaataacgcctcattcattgttccgtccc
cattttacaacattaacccaaagatctccatctattctgagcaaatctggcgtctctttg
ctcctacttgagatactaaattacagactacttcctctatataggtatcatggaaaaagc
aaggcattgatgtatgatgtcacaaagataatatcaatgattaagggtaaacgtggagag
catcgtctttttagattagctgaaaatttgtgcatgaatctgattctctcgctgaaagac
ttcttttttgtgaaaaaagaactgaaggggccaactgagtttacagaaactcttaaccgc
ataacgataataagtctcgctatcaccatcaagacacgtggcattgctgaggttgaacac
atgatttatctccaaccattgctagagcaaattatggcaaccagtcagcatacctggtcg
gaaaagacattacgttatttccctcctcttattcgtgactttttaatggggagaatggat
aagaggggccaagctatccaagcatggcagcaggcagaaacaactgttattaaccaatgc
aatcagctgctctcaccatctgctgagccaaactatgtcatgacttatttgagccacagt
ttccctcagcaccgtcaatatctttgcgctggtgcttggatgctgatgaatggacatctt
gatatcaacagtgcaaatcttgctcgtgttttaagagagttttcacctgaggaagttaca
gcaaatatctatacgatggtcgatgttcttctgcatcatatccagtttgaggtgcaaaga
ggccatctagcacaggacttactatccaaagcaatcacaaatctttctttctttatatgg
acacatgagcttcttccactggatattttactgctagcacttattgacagggatgatgat
ccttatgctttacgccttgtgataagtcttcttgaaaagccagagcttcagcaaagagtc
aaggcattctgcagttctcgttctccagagcattggctcaaaaatcaacatcctaaaaga
gttgagctccagaaagcgcttggtaaccatctatcatggaaggaccgttatccccccttc
ttcgatgacattgctgcacgcttgcttcctgttatcccgctgattatttataggcttatt
gagaatgatgctacagacattgcagacagagttcttgcattttattcttccttgcttgcc
ttccacccgctaaggtttacgtttgtacgtgatattcttgcatatttctatggtcatctt
ccaatcaaactgattggtaggatcctcaacttgttgggtgttagcactaagactcccttc
tcagaatcttttgctaaatatttagtgtcctctaattcatcagtttgtccaccaccggaa
tactttgccaaccttttgctaaacctggtcaataatgtcatacctcctttgagtagcaaa
tccaaatcaaccccagcagacacaacacgctcaactttcaacaagcatcatgtgtcttca
caacctggtggaatcggtaacaacgatggtcagagggcattttatcagaatcaagatcct
ggctcgtatacacagcttgttttggaaacagcagctattgagattctctcacttcctgta
tctgctgctcaaatagtatcctctttggttcaaataatagcacatgtacaagcaatgctt
atacagtcaaatagcggccaaggaatgtcaggtggtttggggcaaagttctgtgctgcca
acttctccttcaggcggaagtgctgaaccttcaggttccaaccaaacaaacagtgctgca
agtgggatcagtgccactaactttgtttctaggagtggctactcttcccaacaattgtct
gttttgatgattcaagcatgtggtcttttgctggcgcaactcccaccagaattccacatg
caactatactcagaagccgctcgtgtcataaaagattgctggtggctagctgatagttcg
aggcctgttaaagaccttgactctgctgttggctatgcactgctggatcctacatgggct
tctcaagacaacacatcaacagccataggtaacattgtcgccctgttgcactcatttttt
agcaatcttccacaagaatggctggaatctacccatactgtcataaaacaccttcggcca
gtcaattcagttgccatgttaagaatcgccttccgcatattgggtcccttgttacctcgt
ctagcctttgcccgacctttgttcatgaagaccttggcgttactgttcaatgttttgggt
gatgtatttggtaagaactctcaggtcccgaatcctgtggaggcttcagaaattacagac
ataattgacttcttgcatcatgctgtgatgtatgaaggccaagggggtcccgttcagagc
actagcaaacctaagctggagatactaacattatgtgggaaagttatagaaattttgagg
acagacgtgcaacatctcctctctcacctgacaactgatcccaactgctcaatatatgca
gcgactcatccaaagctcgttcaaaacacatcctaa
DBGET
integrated database retrieval system
