Panicum virgatum (switchgrass): 120641087
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Entry
120641087 CDS
T07260
Name
(RefSeq) chloride channel protein CLC-c-like
KO
K05016
chloride channel 7
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120641087
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120641087
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pvir04040
]
120641087
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120641087
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Lysosomal membrane proteins
120641087
Ion channels [BR:
pvir04040
]
Chloride channels
Chloride channel (CLC)
120641087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Voltage_CLC
CBS
Motif
Other DBs
NCBI-GeneID:
120641087
NCBI-ProteinID:
XP_039772980
LinkDB
All DBs
Position
7K:complement(33556384..33565759)
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AA seq
794 aa
AA seq
DB search
MDGHHLPPSHQSPPAQPERRGSFNYDIESTDAAWRGAHTASEALMRYDDDGTREPLLRKR
TTNTTSQIAIVGANVCPIESLDYEIVENDLIKQDWRSRKKKQIFQYIVLKWSLVLLIGLC
TGLVGFFNNLAVENIAGFKLLLTGDLMLQKRYFTAFLAYGGCNLVLAASAAAICAYIAPA
AAGSGIPEVKAYLNGIDAYAILAPSTLFVKIFGSILGVSAGFVLGKEGPMVHTGACIANL
LGQGGSRKYHLTCNWLRYFKNDRDRRDLITCGSAAGVAAAFRAPVGGVLFALEEAASWWR
SALLWRTFFTTAVVAVVLRGLIGFCRSGKCGLFGQGGLIMFDLSATIPSYSTQDIVAIIV
LGIIGGVFGGLFNFLLDRILRAYSFINEKGAPYKILLTITISIITSACSYGLPWLAPCTP
CPADAVEQCPTIGRSGNYKNFQCPPGHYNGLASLFFNTNDDAIRNLFSSGTEKEFHMSTL
FVFFTAIYCLGLVTYGIAVPSGLFIPVILAGATYGRIVGTLLGPISDLDPGLFALLGAAS
FLGGTMRMTVSVCVILLELTNDLLMLPLVMLVLLISKTIADSFNKGVYDQIIVMKGMPFL
EAHAEPYMRHLVAGDVVSGPLISFSGVERVGNIVQALRITGHNGFPVVDEPPLSEAPELV
GLVLRSHLLVLLKGKGFMKDKVKTSGSFVLKKFGAFDFAKAGSGKGPKIEDLDFTDEEMD
MYVDLHPITNTSPYTVVETMSLAKAAVLFRALGLRHLLVVPKTPGRPPIVGILTRHDFMP
EHIHELFPNLHKSH
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggacggccaccacttgccgccctcccaccaatcgccgccggcgcagccggagcggcgc
ggcagcttcaactacgacatcgagagcacggacgccgcatggcgcggcgcgcacacggcg
tcggaggcgctgatgcggtatgacgacgacggcacgcgggagccgctgctgcggaagcgc
accacgaacactacctcccagatcgccatcgtcggcgccaacgtctgccccatcgagagc
ctcgactacgaaattgtggaaaacgaccttatcaagcaagattggcgatcaagaaagaag
aagcaaatattccagtatattgttctgaaatggtccttagttcttctcattggcttgtgt
acgggacttgttggcttcttcaacaaccttgcagttgaaaacattgctgggttcaaactg
ttgctcacaggtgatctaatgctccagaagaggtacttcacagcctttttggcatatgga
ggctgcaatttagtcttggcggccagtgctgcagcaatctgcgcttacatagctcctgct
gctgctgggtctggtatccctgaagttaaagcataccttaatggaattgatgcttacgct
atactagctcctagtacactctttgtgaagatatttggttcaatacttggagtttcagct
ggatttgtacttggaaaggaaggtccgatggtacatacaggagcatgcattgccaacttg
cttggtcagggggggtcacgcaagtatcatcttacatgtaactggcttagatattttaag
aatgacagagataggcgggatttgattacttgtgggtctgctgctggtgttgcagcagca
ttccgtgcacctgttggtggtgtgctctttgctcttgaggaagcagcatcatggtggcga
agtgctctcctgtggagaacattctttacaactgctgttgttgctgttgtattgaggggc
ttgatcgggttctgccgtagtggaaaatgtggtctctttggtcaaggggggttgattatg
tttgatcttagcgcaaccatacctagttacagtacccaagatatcgttgcaattattgtt
cttgggatcattggaggggtctttggaggcctgttcaactttctcttggataggattctc
cgcgcctacagttttatcaatgagaaaggtgctccatacaagatccttcttacaatcaca
atatcgattatcacatcagcatgctcctatgggctcccttggctcgctccatgcactcca
tgcccagctgatgccgtggagcaatgcccaaccatcggacgctctgggaattataagaat
tttcagtgcccaccaggtcactacaatggtcttgcatcacttttcttcaacacaaatgat
gatgccatccgcaatctgttcagcagtggtaccgagaaagaattccacatgtccactctt
tttgtatttttcactgccatttactgccttggtcttgtgacatacggtattgctgtccca
tccggtcttttcatccctgttatacttgctggggctacatatgggcgcatagtggggaca
ctgcttggtccaatatcagaccttgatcctggactctttgcacttctcggtgcggcatct
ttccttggtggaacaatgaggatgaccgtctcagtttgcgtgatacttctagagctcaca
aatgacctccttatgctcccattggtcatgctcgttcttctaatatcgaagactatagcc
gacagcttcaacaaaggagtttatgaccagatcatagtgatgaaaggcatgccgttcctg
gaggctcatgccgaaccatacatgaggcacttggttgctggtgatgttgtatctgggcca
ctgatctccttttcaggcgttgagagagtggggaacattgttcaggcgttgaggatcaca
ggccacaatggatttccagtggtggatgaaccacctctatcagaggctccagagctcgtt
ggactcgtgcttaggtcccatctgctggtcctactgaaaggcaagggcttcatgaaagat
aaggtgaaaaccagtggtagcttcgtgctgaaaaagtttggtgcctttgattttgccaag
gctgggtctggaaaaggtccgaagattgaggacctggatttcacagatgaggaaatggat
atgtatgttgatctccatccaattacaaatacctcgccgtacacagtggttgagaccatg
tcacttgcgaaggctgcggtcctttttagggcactaggattgagacacctgttggttgtg
ccaaagaccccagggagaccacctatcgttggaatcctgacgaggcacgatttcatgccg
gagcacattcacgagctgttcccgaatctccacaagtcacactga
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