Panicum virgatum (switchgrass): 120641134
Help
Entry
120641134 CDS
T07260
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120641134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120641134
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120641134
mRNA degradation factors
5'-3' decay
Lsm complex
120641134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
120641134
NCBI-ProteinID:
XP_039773056
LinkDB
All DBs
Position
7K:33976175..33979950
Genome browser
AA seq
128 aa
AA seq
DB search
MSWAGPDEILLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGEQ
YCDVPLGLYVIRGENVVLIGELDREKEELPAHMTCVSEAEIRKAEKAEREARDLKGTMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggccgggcccgacgagatcctcctctccacctccctcgccggcttcttggac
aagaagcttattgtgctgctaagagatggacggaaactgcttggcaccctgtgctcattt
gatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgttggggagcaa
tattgtgatgttcctcttggtctatatgtgatacggggagagaatgttgttttgattgga
gaattggaccgcgaaaaggaggaactccctgctcacatgacatgtgtctcagaagcagaa
attagaaaggctgagaaggcggaaagggaagcaagagacctgaaaggcacgatgaggaaa
cggatggagttcctagacttcgactag
DBGET
integrated database retrieval system