Panicum virgatum (switchgrass): 120641198
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Entry
120641198 CDS
T07260
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120641198
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120641198
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120641198
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH3_ISE2
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
IstB_IS21
AAA_22
GlpR
Ski2_cyano_M
Motif
Other DBs
NCBI-GeneID:
120641198
NCBI-ProteinID:
XP_039773145
LinkDB
All DBs
Position
1K:50714481..50745776
Genome browser
AA seq
1171 aa
AA seq
DB search
MHCLAPHFLLLPLPTALRHALPQTQTPPLPLRLPSRAARLHLASARSPSRAAASVSDDDE
DEEEVDVDDDDDDDEIGIRDADDEYEDGDEVDEEAVDEDIGGEDEEEAEDEDDEREDTSA
RRRESEEYKSRRVAKLVAEVREFGEDIIDYNELAGIYDFPIDKFQRLAIQAFLRGSSVVV
SAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFRDFRNTFGDHNVGLLTGDSA
INKDAQILIMTTEILRNMLYQSVGMTASEGRLFQVDVIVLDEVHYLSDISRGTVWEETVI
YCPKEVQLICLSATVANPDELAGWISQIHGKTELVTSNKRPVPLTWHFSKKYALQPLLDG
KGKKMNRKLWMSNFQNLASPKSEFYYVKGKRRLRTNKNEQGNRSPLDISKQVRLSKHELS
NMRRSQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDTEASEVELEL
RRFKMQYPDAVRESAVKGLLRGVAGHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGI
NMPARTAVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTIGHTVLVQTPYEGPEECC
DIIFAGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDLKVKRSGRTLEEARKLVEQSF
GNYVGSNVMVAAKEEIERIQEEIQYLSSEITDESIDRKCREELSEEDYAEISLLQKRLKE
EKQIRNELKKRMELERMAAWKNRLEEFESGHLPFMCLQYKDKDSIQHTIPAVFIGNLKLF
ADQKIANMVEEEDSLGIGKHKVDSGEQLYWPSYYVALSSDNSWYLFTEKWIKTVYKTGLP
AVPSVEGGTLPREILKQLLLREEMMWDKLAKSEYGSLLSTDGSLDTWSWSLNVPVLNSLS
EDDEVERFSLEHQDAVECYKQQRRKVSHLKKTIKSTKGFKEFQKIIDMRNFTKEKIERLE
ARSRRLTRRIKQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIRGENELWLA
MVLRNKVLLDLKPSQLAAVCGSLVSEGIKLRPWKNSSYVYEPSSVVTGVISYLEEQRNSL
IDLQDRHNVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRRTIDLLAQI
PKLPDIDPVLQKNAQIACSVMDRVPISELAG
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgcactgcctcgccccccatttcctcctcctcccattacccaccgccttgcgccacgcg
ctccctcaaacccaaaccccaccccttcctctacgactcccctcccgcgccgctcggctc
cacctcgcctcggcgcgctcgccgtcccgcgccgccgcctccgtctccgacgacgacgag
gatgaggaggaggtcgacgtggacgacgacgacgacgacgacgagataggcatccgcgac
gcggacgacgagtacgaggacggggatgaggtcgatgaggaggcggtggacgaggacatc
ggcggcgaggacgaggaagaggcggaagacgaggacgacgagcgggaggatacctcggcg
cggaggcgggagtcggaggagtacaagtcgcgccgggtggcgaagctggtcgctgaggtg
cgggagttcggggaggacatcatcgactacaatgagctcgccgggatctacgactttccc
atcgacaagtttcagcgcttggcaatacaagcatttttgagaggttcatctgttgtagtt
tctgcacctacaagtagtggaaagacattaatagcagaagctgcagctgttgcaacagtt
gctagaggaaggcgtctcttctacacaactccattaaaggccttgtcaaatcagaagttt
cgtgatttccggaatacctttggtgatcataatgttggtcttcttacaggagattctgct
atcaacaaagatgctcagatcctaattatgacgacagagattttgcgtaacatgctgtac
caaagtgttggcatgacagcatctgaaggtagattatttcaagttgatgtcattgttttg
gatgaagttcattatttgagtgatatctcacgtggcactgtttgggaagaaactgtcata
tattgtccaaaggaagtccagcttatatgcttgtcagctactgttgcaaatcctgatgaa
ctagcgggctggataagtcagattcatggtaagacggagctagtaacatcaaacaaacgt
ccggttccacttacgtggcacttctcaaagaaatacgccctacaaccacttcttgatgga
aaggggaagaaaatgaataggaaactgtggatgtctaactttcaaaacttggcatcccca
aagagtgagttctattatgtgaaaggaaagaggagacttaggacaaataaaaatgagcaa
ggtaatagaagccctttggacatatcaaaacaggttcggttgtcaaagcatgaactcagc
aatatgcgccgctcccaagttccactaatacgcgacactttatcacaactttgggaaaat
gacatgcttccagctatttggtttatttttagtagaagagggtgtgatgcagctgttgag
tatcttgaggattgcagattgttgcatgacactgaggctagtgaagttgaactggaactc
aggagattcaagatgcaatatcctgatgctgtccgagaaagtgctgtaaaaggactcttg
cgaggagttgctggccatcatgctggttgcttgccactgtggaaatcattcattgaagaa
ttatttcagcgtggccttgttaaagtagtttttgcaacggaaacccttgcagcagggatt
aacatgcctgcgaggacagctgtgatttcttctctcagcaaaagaatagatgccgggcgt
cagctcttaaccccaaatgaactattccagatggcaggccgtgctggaaggagagggatt
gatacgattgggcatactgttcttgttcagactccatatgaaggacctgaagagtgttgt
gacattatatttgctggacttgagccacttgtctcacaattcactgcatcatatgggatg
gttttgaacctccttgctggttccaaagttactcataatcagaaagaatcagatgatctt
aaggtcaagcgctctggaagaactttagaagaagctcgaaagctagtggagcaaagcttt
gggaattatgttgggagcaatgtaatggttgctgccaaagaagagattgaaagaatacag
gaagaaatacaatacctctcttcagaaattaccgatgaatctattgaccgaaaatgcagg
gaagaattatcagaggaagattatgctgagatttcccttttacaaaagagactaaaggaa
gagaagcagatcagaaatgaactgaaaaaaaggatggaactggagagaatggctgcatgg
aaaaatcggctggaagaatttgaaagtggccatcttcctttcatgtgtctgcagtataag
gacaaggattcaattcagcacactatccctgctgtatttattggaaacctcaaattattt
gctgatcaaaagattgcgaacatggtggaagaagaagattcacttggtataggcaagcat
aaagttgacagtggggaacaactttattggccatcttactacgtagctttaagttcagat
aattcatggtatctgttcacagagaaatggataaaaactgtctacaagacaggtcttcct
gctgtcccttctgttgaagggggcacgctccctcgagaaatcctgaagcagctccttttg
cgtgaagagatgatgtgggataaacttgcgaaatcagaatatggttctttgttaagcaca
gatggttctctagacacttggtcgtggagtctcaatgttccagtgcttaatagcctttcg
gaagacgatgaggtagaacgattctccctggaacatcaagatgcagtagaatgctacaag
caacagaggaggaaggtttcacacttgaagaaaacaatcaagagtactaagggcttcaaa
gaattccaaaagatcattgacatgagaaactttacaaaagaaaagattgagcgcttggaa
gctagatccagacgcttgactcgacggataaaacaaattgaaccaactggttggaaagaa
tttctccagattagcaaagttatacaagaggctagagcattagatatcaacactcaggta
atctatcctttgggtgagacggcagcagctatacgaggagaaaacgagctatggcttgct
atggttcttaggaacaaggtcctcttggatctaaagccatctcaattggcagcagtttgt
ggaagtttagtgtccgaagggatcaaacttcgtccttggaaaaatagcagttatgtatac
gaaccttcttctgttgtcaccggtgttataagctatttagaagagcagagaaactcgctc
atcgatctccaggatagacataatgttaagataccctgcgaaatagatgcccagtttgct
gggatggttgaagcctgggcttcagggttgacctggagggagataatgatggactctgca
atggatgacggagatttagcccgtctgctcaggcgcacaatcgacttactagctcagatt
ccgaaattaccagacattgatccagttctccaaaagaatgcacaaattgcttgcagcgtc
atggaccgagtacccattagtgagcttgccggttga
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integrated database retrieval system
