Panicum virgatum (switchgrass): 120641261
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Entry
120641261 CDS
T07260
Name
(RefSeq) SWI/SNF complex subunit SWI3A-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120641261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120641261
03036 Chromosome and associated proteins [BR:
pvir03036
]
120641261
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120641261
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120641261
PBAF complex
120641261
GBAF(ncBAF) complex
120641261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SURF2
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
CCDC138_C
Motif
Other DBs
NCBI-GeneID:
120641261
NCBI-ProteinID:
XP_039773240
LinkDB
All DBs
Position
7K:36822980..36832317
Genome browser
AA seq
726 aa
AA seq
DB search
MSPPAAGAAATSGDGPPSSPRELYTIPASSGWFRWDGIHETERRALPEFFGGAGGAGFGT
ATRNPRIYREYRDFIIAKYREDPARRLTFTEVRRALVGDVTLLRKVFAFLDASGLINFSA
SSSSSGPASRQQEVGVVVESPVGLQVTPRPPASYFAEEKRGGAGGEKENGFRLPPLTSYS
DVFGEWAPGKAPICGFCGEECNDEKVETLKAGFKVCSKCSKSNNDNKEEANKCPGDKKES
VDNHASSPWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTI
NGKSVSRLHMNQATDGKMNQHLMNDSSSNSTEKVDGMRIDGNEDSADKSVEEHPTKRRRL
FSSMDATTSLMEQLALLTTSTSPDVVAAAADAAIKALGDENPQARKAFRLSEREFKTKAF
ASNHVQQIDRKVGNKDVEMHGQTGSDKQQEKKFVASAYQVRASVATAIGVAAACAKMLAD
QEEREMELLMASIIETQTGHELPEREKESYARSRACRLALIDHAVARKKPPLNAFKPHPE
HKSKLVCNITGDTVNKSEEHIWKHINGKRFLNKLEKLEEQMSSGEMANGEAAKSNEMEKK
SKSSKKDKKGKKKSNGASPSVPREPKPEMDDSDDPDFWVPPVGSRWDDDDGKDRWKSSLG
KNDSAKNKGGSDDDDGGDNDDGNDDDIADKDDAESRELASRTKRMSLEAVGPSSFASRKK
KPKKEQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggcggctggcgcggccgccacctccggcgacgggccgccgtcgtctccg
cgcgagctctacaccatcccggcctcatccggttggttccggtgggacgggatccacgag
acggagcgccgcgcgctgccggagttcttcggcggggccggcggcgccgggttcgggacg
gccacgcggaacccgcggatctaccgcgagtaccgcgacttcatcatcgccaagtaccgg
gaggacccggcgcgccggctcaccttcaccgaggtccgcagggcgctcgtcggggacgtc
acgctcctccggaaggtcttcgccttcctcgacgcctccggcctcatcaacttctcggcc
tcctcctcgtcctcggggcccgcgtcgcggcagcaggaggtgggggtcgtcgtggagtcg
cccgtggggctgcaggtgacgccgcgcccgccggcgtcctacttcgccgaggagaagcgg
ggaggggcgggcggggagaaggagaacgggttccgcttgcccccgctgacctcctacagc
gatgtgtttggcgaatgggcgcctgggaaggcccctatatgtgggttttgcggcgaggag
tgcaatgatgagaaggttgagacgttgaaggctggttttaaagtatgttcaaagtgttcc
aaaagcaataatgataacaaggaagaagcgaataaatgtcctggtgacaaaaaggagagc
gtggacaaccatgcttctagtccatggacagacgcagagacgttactcctattagaagga
gtcctaaaacatggagatgactgggatcttatcgcccagcatgtacgcacaaagaataaa
tcagaatgcatagcaaggcttattcagttgccttttggtgaacatatgctgggcacaata
aatggtaaatctgttagccggctccacatgaaccaggcaactgatggaaaaatgaaccag
caccttatgaatgactcttcaagcaattcaactgaaaaggttgatggcatgcgtattgat
ggaaatgaagatagtgctgataaatcagtagaagaacatcctacaaaacgcagacggttg
ttttcttcaatggatgctaccacttcattaatggagcagttagcactcctgaccacatca
acgagcccagatgttgttgctgcagctgctgatgctgcaattaaagctttgggcgatgaa
aatccccaagcaaggaaagcctttcgccttagtgaacgagaatttaagactaaggcattc
gcttcaaaccatgtccaacagatcgatcgcaaagttggcaataaggatgtggaaatgcat
ggccagactggttctgataagcagcaggaaaagaagttcgttgctagtgcatatcaagtg
agggcatctgttgctaccgctattggtgtagctgctgcctgtgctaaaatgcttgcggac
caggaggagcgagaaatggagctcctaatggcgtcgataattgaaactcagacggggcac
gagctgccggagcgggagaaggagtcctacgcgcggtcccgcgcctgccgtctcgcgctc
atcgaccacgccgtcgcgcgcaagaagccgccgctcaacgccttcaagccccaccccgag
cacaagtcgaagctggtatgcaacattacaggggatacagttaacaagtcggaggagcac
atatggaagcacatcaacgggaagagatttcttaacaagctagaaaagctagaagaacag
atgtcttctggtgagatggctaatggagaagctgctaagtcaaatgaaatggaaaagaag
agcaagtcaagcaagaaggacaagaaaggcaagaagaaatctaatggtgccagtccttct
gtgccacgagaacctaaaccagagatggatgattcggatgatcccgatttttgggtgcct
cctgtcggaagtcgctgggatgatgatgacgggaaagacagatggaagtcctcactgggg
aagaatgactcagcaaagaacaaaggtggttctgatgatgatgacggtggtgataatgac
gatggcaacgatgatgacatagctgacaaggatgatgctgaatcaagggaacttgcttcg
aggacaaagcgaatgtcactagaagcagttgggccaagtagcttcgcctcaaggaagaaa
aaacccaagaaggagcagtaa
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