Panicum virgatum (switchgrass): 120641297
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Entry
120641297 CDS
T07260
Name
(RefSeq) elongator complex protein 3-like isoform X1
KO
K07739
elongator complex protein 3 (tRNA carboxymethyluridine synthase) [EC:
2.3.1.311
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120641297
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.311 tRNA carboxymethyluridine synthase
120641297
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
120641297
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ELP3_N
Radical_SAM_C
Radical_SAM
Acetyltransf_1
Acetyltransf_10
Acetyltransf_7
FR47
Motif
Other DBs
NCBI-GeneID:
120641297
NCBI-ProteinID:
XP_039773280
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Position
7K:complement(37166214..37170387)
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AA seq
571 aa
AA seq
DB search
MATAAAAAVAAPEQPRRRKPTPGRGGVVLPAGLSEEEARVRAIAEIVSAMGELSRRGEDV
DLNALKSAACRKYGLARAPKLVEMIAAVPEADRAALLPRLRAKPVRTASGIAVVAVMSKP
HRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLK
RLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVCYSEHSAVKCI
GMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKD
AGFKVVAHMMPDLPNVGVERDLESFREFFESPAFRADGLKIYPTLVIRGTGLYELWKTGR
YRNYPPELLVDIVARILSMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGL
KCRDVRTREAGIQDIHHKIRPDEVELVRRDYAANEGWETFLSYEDTRQDILIGLLRLRKC
GRNVTCPELVGRCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIVRREHRSK
KLAVISGVGTRHYYRKLGYELEGPYMVKCLA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgccgccgccgccgccgtggcggcaccggagcagccgcgccgccggaagccg
acgccggggcgcgggggagtggtcctccccgcgggcctctcggaggaggaggcccgtgtg
cgggccatcgcggagatcgtgtcggcgatgggggagctctcgcggcgcggggaggacgtg
gacctcaacgcgctcaagtccgccgcgtgccgaaaatacgggctggctcgggcgcccaag
ctggtggagatgatcgcggccgtgcccgaggccgaccgcgccgcgctgctgccgcggctg
cgcgccaagcccgtgcgcacggcctcgggcatcgccgtcgtcgccgtcatgtcgaagccg
caccggtgcccccacatcgccaccaccgggaacatctgcgtgtactgcccgggaggcccg
gactccgacttcgagtacagcacgcagtcctacactggatacgagcccactagcatgcgt
gccattcgggcaaggtacaacccatatgtgcaagccagaagcaggatagatcagctcaag
aggctaggacatagtgtggataaggttgaattcatcttgatgggtgggactttcatgtcc
ctaccagctgattatcgtgattatttcatcagaaatcttcatgatgctttatcgggtcac
acttctgcaaatgttgaggaggctgtttgttattcagaacatagtgctgtcaaatgtatt
ggtatgacgattgagacgagacctgattattgcttgggccctcatctgcgccagatgcta
tcttatggatgtacccgcttagaaattggtgtgcagagtacatacgaggatgtcgcccgt
gacacaaacagggggcacacggtggctgctgttgctgattgcttttgtttggcaaaagat
gctgggtttaaggtggttgcccacatgatgccagatttacctaatgttggagttgaaaga
gatctggaaagtttcagagagttttttgaaagtccagcattccgagccgatggtcttaag
atttatccaacacttgtcattcgtggaactggtctttatgagctctggaaaactggcaga
tatagaaattatccacctgagctgttggtcgatattgtggctaggattctgtctatggta
ccaccatggacacgagtgtatcgggtccagagagatattcctatgcctcttgtcacttct
ggtgtcgagaaaggtaaccttcgtgagcttgctttggctcggatggaagatctgggcttg
aaatgccgagatgtcagaacccgtgaggcagggattcaggatattcatcataaaatcagg
ccagatgaagtagagcttgtcaggcgtgactatgctgcaaatgagggttgggagacgttc
ctttcttatgaggatacacgacaggatatcctgattggcctactgcgcttgcgtaaatgt
ggccgtaatgttacatgccctgaactagtagggaggtgttcaattgttcgtgagcttcat
gtctatggaactgcagtccctgtgcatggtcgtgatgcagataaactacagcaccagggt
tatggaactctactaatggaagaagcagagagaatcgttcgaagggaacaccgttccaag
aaattggctgtgatttcaggagttggtactcgccactattaccgcaagttgggttatgag
cttgaagggccttacatggtcaagtgtttggcatga
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