Panicum virgatum (switchgrass): 120641300
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Entry
120641300 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120641300
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120641300
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120641300
03036 Chromosome and associated proteins [BR:
pvir03036
]
120641300
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120641300
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120641300
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120641300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B56
DUF349
Motif
Other DBs
NCBI-GeneID:
120641300
NCBI-ProteinID:
XP_039773283
LinkDB
All DBs
Position
7K:complement(37173544..37178021)
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AA seq
513 aa
AA seq
DB search
MIKQILGRLPRKPGKAGDSRDAAAGVAAGNGTEPSNSYSVARSVDSGNKRAGNGDYSVPP
GVTPNPVMNGAVLYHSNEPLPAFKDVAASEKQNLFVKKVNLCCAVYDFMDPTKNLKEKEV
KRQTLMELVDYVTSANGKFSEVVMQEITKMVSINLFRSSSPAPRENKAIEGVDLEEDEPL
MDPAWSHLQIVYEVFLRFVASQETDAKLAKRYIDHSFILRLLDLFDSEDPRERDYLKTIL
HRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLF
LVRALIPLHKPKCVSMYHQQLSYCITQFVEKDCKLSDTVIRGLLKYWPVTNSSKEVMFLG
ELEEVLEATQLAEFQRCMVPLFCQIARSMNSSHFQVAERALFLWNNDHIENLIKQNYKVL
LPIIYPALERNTRDHWNQAVRSLTLNVRKIFSDHDSAFFGECAQRFNDEELKQQETDSKR
EALWKRLEEMATSKLGENNPSGTPNGKSSQAAG
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgattaagcagatccttggccggctgccgaggaagccagggaaggctggggatagccgg
gatgctgctgctggggtggctgcggggaacggtacagagccgtcgaattcttacagtgtt
gccaggagcgtggactcggggaacaagagggctggaaatggggattactcagtgccacct
ggggtaactcctaacccggtgatgaatggggctgtgctgtatcactccaatgagccgctg
ccagccttcaaggatgtggcagcgtccgagaagcagaatttgtttgtcaagaaggtgaac
ctgtgctgcgccgtgtatgacttcatggatccgacaaagaacctgaaggaaaaggaggtg
aagcgccagacgcttatggagctggtcgattacgtcacttcagcaaatggcaagttctcg
gaggttgtcatgcaggagatcaccaagatggtgtcgattaacttgttccggagctccagc
cccgcgccccgtgagaacaaggccattgagggagttgatctggaggaggacgagcccctc
atggaccctgcatggtcgcacttgcagattgtgtatgaggttttcttgaggtttgttgca
tcgcaggagacagatgcaaagctcgccaagagatacatagatcattccttcattcttagg
ctactagatctttttgactcagaggaccccagggaaagggactatctaaagacaatactt
cacagaatatatggtaaattcatggttcatcgcccattcatcaggaaagcaattaacaac
atattctacaggttcatatttgaaacagaaaagcataatggtattgcagagctgttggag
atcctgggcagtattattaatggttttgcccttcctcttaaggaagaacacaagttgttc
cttgttcgtgcattgatccctcttcacaagccaaagtgtgtatctatgtaccatcaacag
ctatcttattgcatcacacagtttgttgaaaaggactgcaaactttctgacacagttatt
aggggcttactgaaatactggcctgtgacaaacagttcaaaggaggttatgttcttgggt
gagttagaagaggttttagaggcaacacagcttgcggagtttcaaagatgcatggttcca
ctcttctgccaaattgcccgtagcatgaacagctcccattttcaggtggcagagcgagct
ctgtttctctggaacaatgaccatattgaaaacctgattaagcaaaactacaaggtgcta
ttacctatcatctatccagcactcgagagaaacaccagagatcactggaaccaagctgtt
cgtagcctgacattgaacgtacgcaagatcttctctgatcatgattctgcattcttcggg
gagtgcgctcagaggttcaacgatgaggaacttaagcagcaggaaactgattcaaagcga
gaagccctgtggaagcgcctagaggaaatggccacctcgaaactcggtgaaaacaatccc
tcgggcacacccaatggcaaatccagtcaagctgctggctag
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