Panicum virgatum (switchgrass): 120641375
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Entry
120641375 CDS
T07260
Name
(RefSeq) autophagy-related protein 13a-like
KO
K08331
autophagy-related protein 13
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
120641375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120641375
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120641375
Membrane trafficking [BR:
pvir04131
]
Autophagy
Autophagosome formation proteins
ULK complex
120641375
Atg1 complex
120641375
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120641375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
120641375
NCBI-ProteinID:
XP_039773393
LinkDB
All DBs
Position
7K:complement(40991764..40996118)
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AA seq
500 aa
AA seq
DB search
MSGMSDSAGGGRAGAELMVEQFHLKVLHAVLAVRTPRPLAAAAAAPAAASAFRRRDRWFH
LPLHDPPPPPEAADRLEPLAPGEPLVVDVLLSPAGVGAGPGGEVVERWTVACEPWPDAAG
GEEVAVNRAYKHCFTLLRSVYAVLRVLPAYRVFRLLCANHSYNYEMVHRVDTFAEPFSRA
QEAALRSHRFVPVETQLGRLVVSVQYLPSLASFNLEITSLSPSKIIPDYVGSPAAEPMRA
FPASLTEATGSAFPSSYQLQRPHSWAPPVFWPHTPAQQVFYASPTPSPPHFPGGYLQKRL
TRGESAPMPIPQVGERRSPVHRQNTLPPPSPRRGDMGTASAQESPSEIGRLIGRLSPRHK
GKDNKDESGRFSALSSCDSPRQDDLEDYPFFVDDVDPPVSKPGSSDGKETSDQACSLSHK
SQDAQVGSLVYLLRNAPPLRDHPSYSLQTSRAESSQAASASSAPSRRTSDALEELQAFKE
IRERLQCRGSAKHQEPPGKP
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggatgtccgactccgcggggggcggacgcgccggcgcggagctgatggtcgag
cagttccacctcaaggtgctccacgccgtcctcgccgtgcgcacgccgcgcccgctcgcc
gccgccgccgcggcgccggcggcggcttcggcgttccggcggagggacaggtggttccac
ctcccgctgcacgacccgccgccgccgcccgaggcggccgaccgcctggagccgctggcc
cccggggagccgctcgtggtggacgtcctgctgtcccccgccggcgttggagcgggaccg
ggaggggaggtggtggagaggtggacggtggcgtgcgagccctggccggacgccgcgggc
ggcgaggaggtggccgtgaaccgggcctacaagcactgcttcacgctgctcaggtcggtg
tacgccgtgctccgcgtcctcccggcgtaccgcgtcttccgcctcctctgcgccaaccac
tcctacaactacgagatggtccaccgcgtcgacaccttcgccgagcccttctcacgcgcc
caggaggccgccttgcgctcccaccgcttcgtccccgtcgagacccagctcggccgcctc
gtcgtctccgtccagtacctccccagccttgcctccttcaacctcgagatcacttccctt
tcgccctccaagataatccccgactacgtcggcagcccagccgctgagcccatgcgcgcc
ttcccggcctcgcttaccgaagccaccggctccgccttcccatcgtcctatcagctgcag
cgcccgcacagctgggctccgcctgtcttctggccgcacacgccggcacagcaggtgttt
tacgcctcacccacgccctcgccgccccactttccaggtgggtacctgcagaagcgtctc
actaggggggaatcagcgccaatgccaataccacaggtgggtgagaggaggagccctgtg
caccgccagaacacgctgccaccgccatctccaagaagaggagacatggggacagcaagt
gctcaagagtctccgtcagagatcggccggttgattgggaggttgtcacccagacacaag
ggcaaggacaacaaagatgaatctggcaggttctctgcactctcctcatgtgattcccct
cggcaagacgatctggaggattatccttttttcgtggatgatgttgatcccccggtctcc
aaacctgggagcagtgatgggaaggaaacaagtgatcaggcatgttcgttgtctcataaa
tctcaagatgcacaagttggttctctagtctacctgctgagaaacgctcctccgctgcga
gatcatcctagctattcattacaaacatcaagggctgagtccagccaagcagcctcagca
agctccgccccgtcccgaaggacatctgatgcacttgaggagctccaggccttcaaagag
ataagggagcgactgcagtgcaggggcagcgcaaaacatcaagaaccaccagggaaacca
tag
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integrated database retrieval system
