Panicum virgatum (switchgrass): 120641431
Help
Entry
120641431 CDS
T07260
Name
(RefSeq) tRNA pseudouridine synthase Pus10-like isoform X1
KO
K07583
tRNA pseudouridine synthase 10 [EC:
5.4.99.25
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120641431
Enzymes [BR:
pvir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
120641431
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120641431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pus10_C
Pus10_N_euk
FitA-like_RHH
Motif
Other DBs
NCBI-GeneID:
120641431
NCBI-ProteinID:
XP_039773504
LinkDB
All DBs
Position
7K:complement(42707605..42711903)
Genome browser
AA seq
549 aa
AA seq
DB search
MADTNASAEAEARSILERAAESSFPPLHAVHHLLSVGACVRCILRLLGAYSSACSCASLT
SSVLHSFLEEHDGSIKGGSCSCLSADDSYCSVCLGVLLPAWHRDEGLEVPHNESISSMIS
RVVQKEGYQVGEFSLEISLPPVIAANECAVRLYMKQKFGNENWFKDKMFPQQTMSVKEAL
RLLIVPLLEKQMNAKYGNSSFRIRLTYTHGDASQKLHSLLPNENNRKRKADSRNGGDTSN
EAHKRNSADANNKQISESDSFIYKTLESIQDREFCNLIQLPPEKVSKPCHLVISCLRSPI
YIGGRYLKLSRNVSQSCWIIDDERMGEASVEEIIGGNVRAICRVDRCKFHAAGREDIDVR
MLGSGRPFLVELLNVRSIPSEIEVQQIEDRINNSEMKYVRVRNLKLVGNEIWTMMREGEA
EKQSKAYFIIYVQKQYAALIWTSRELVENDLHNISVTKEMEIVQKTSIRVLHRRSPLERK
RIIHWMEIEKVAGGSNYYLLQLCTQAGTYIKEFVHGDLGRTHPSIGTILGCRAEILQLDV
TDVKMDFLQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaccaatgcatcggcggaggcggaggcacggagcatccttgagcgcgctgcg
gagtcctccttcccgccgctccacgccgtccaccacctcctctccgtcggggcctgtgta
cgctgcatcctgcgcctgctcggagcctatagcagtgcctgctcgtgtgcatcacttact
tcatcagttttgcattcctttcttgaggagcatgatggttccataaaaggagggtcttgt
tcatgtctgtcagcagatgattcatactgctctgtttgcttgggagtattgctgccagcc
tggcatcgagatgaaggtctagaagtgccccataatgaaagcatctcttcaatgatatct
cgagtagtgcaaaaggagggttaccaagttggcgagttctctctagaaatctcactgccg
ccagtgatagctgctaatgagtgtgctgttagattgtacatgaaacaaaaatttggcaat
gagaattggttcaaggacaaaatgtttccacaacaaaccatgtcagtgaaggaagccttg
cgactgttgatagtaccattactcgaaaaacagatgaatgctaaatatggtaacagttca
tttagaattcgcttaacatatactcatggtgatgcttcacaaaagcttcatagtttattg
ccgaatgagaacaaccgtaaaagaaaagcagattcaagaaacggaggtgatacttcgaat
gaggcgcataaaaggaattcagcagatgccaacaataaacaaataagtgaatcagattca
ttcatctacaagactcttgagagcatccaagatcgtgaattctgtaatttaattcagttg
cctcctgaaaaggtgtccaaaccctgccatcttgtgatatcatgcctgagatcacctata
tatattggtggaagatatttgaagctttcaaggaatgtcagtcagtcatgttggataata
gatgatgagagaatgggggaagcttcagttgaggagataattggggggaatgtacgtgcc
atctgcagagttgatagatgcaagttccatgctgctggaagagaagacattgatgtacgg
atgcttggatctggtcgtccatttctagttgaattattgaatgttcggtccatcccatct
gaaatcgaagttcaacaaattgaagacagaataaacaactctgaaatgaaatatgtcaga
gttcgaaatctcaagttggtaggcaatgaaatatggacaatgatgcgtgaaggagaagca
gagaaacagagtaaggcttattttattatatatgtgcagaaacaatatgctgcccttata
tggacttctcgtgaattggtggaaaatgatctgcataatatttctgttacaaaggagatg
gagattgtacagaagacctcaataagagtacttcatcgtagaagcccattagagcgaaaa
cgtattatacactggatggaaattgagaaagttgctggcggctcaaactattacttgttg
caactatgcacccaggctggaacatacatcaaggaattcgtgcacggtgatcttggacgc
acgcaccccagtatcggcaccatattaggttgcagagctgagattttgcaactcgatgtc
actgatgttaagatggacttcctccaatag
DBGET
integrated database retrieval system
