Panicum virgatum (switchgrass): 120641459
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Entry
120641459 CDS
T07260
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic-like
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120641459
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120641459
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GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-met
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_4
zf-C2H2_STOP2_C
Motif
Other DBs
NCBI-GeneID:
120641459
NCBI-ProteinID:
XP_039773541
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Position
7K:43179861..43186691
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AA seq
596 aa
AA seq
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MASNSSAAFFGIRDGDQQDQIKPLISPQQQQQHLAAALPGAASNAPASGQGAPAAAAQPP
PKKKRTLPDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLPWKLKQKN
PLQAQRRRVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDW
KAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPPTSLSSLTGHLYGATN
AGNMALSLSQVGSHLNSTLQDGHHHHPSPELLRLGAAAGGGGGSIAARLDHLLSPTSGAS
AFRPAPQGSAAAFFLNAAGQDFGDDAGNGPHSFMQAGKPFHGLMQLPDLQGNGAGGPGGS
APGLFNLGFFANNGNSSGSSHEHASQGLMNNDQFSGGAGGGVGGGGSEASAAGIFGGNFV
GGGDHVPTPGLYGGDQATMLPQMSATALLQKAAQMGATSSPNGAASMFRGFVGSSPHGHG
RPATPHHMEQSEANLNDLMNSLAGGGVSAAGMFGGSNGGGAGMFDPRQLCDMEHKVKFGQ
GGGGGDMTRDFLGVGGGGIVRGISTPRGDHHQSSSDMSSLEAEMKSASSFNGGRMP
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgaattcatcggcggcgttcttcgggattagggatggggaccagcaagaccag
attaagccgctgatatcaccgcagcagcagcagcagcacctggcagcggcgctccccggt
gctgcttcgaacgctccggcgtccggccaaggcgcgccggcggcggcggcgcagccgccg
cccaagaagaagagaactttgccagaccccgacgccgaggtgatcgcgctgtctcccaag
acgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaaggggttccagcgggag
cagaacctgcagctgcaccggcgcgggcacaacctgccgtggaagctcaagcagaagaac
ccgctgcaggcgcagcggcggcgcgtgtacctgtgcccggagccgacgtgcgtccaccac
gacccgtcgcgcgccctcggcgacctcaccggcatcaagaagcacttctgccgcaagcac
ggcgagaagaagtggaagtgcgacaagtgctccaagcgctacgccgtgcagtccgactgg
aaggcgcactccaagatctgcggcacccgcgagtatcgctgcgactgcggcaccctcttc
tccaggagggacagcttcatcacccaccgggccttctgcgacgcgctcgcgcaggagagc
gcgcggctgccaccgacgagcctcagcagcctcaccggccacctctacggcgccaccaac
gcgggcaacatggcgctcagcctctcgcaggtgggctcccacctcaactccacgctccag
gacggccaccaccaccacccgtccccggagctcctgcgcctcggcgccgcggccggcggc
ggcggcggcagcatcgccgcgcgcctcgaccacctcctgtcgcccacctccggcgcgtcc
gccttccgcccggccccgcagggctcggcggcggccttcttcctcaacgcggcggggcag
gacttcggcgacgacgccggcaatgggccccactcgttcatgcaggccggcaagccgttc
catggcctcatgcagctccccgacctccagggcaatggcgctgggggccccggcggctcg
gcgccaggcctcttcaacctgggcttcttcgctaacaatggcaacagctcggggtctagt
catgagcacgcgagccaggggctcatgaacaatgaccagttcagcggcggggcaggtggt
ggcgtcggaggcggtggttcggaggcatcggcggcggggattttcggcggaaactttgtt
ggtggcggagaccatgtcccgacgccggggctctacggcggtgatcaggccaccatgctg
ccgcagatgtcggcgaccgcactgctccagaaggcggcgcagatgggcgccacctcgagc
cccaacggcgcggcatccatgttccgaggctttgtcggctcttcccctcacgggcacggg
cggccggcgacgccgcatcacatggagcagagcgaggcgaacctgaacgacctgatgaac
tcgctcgccggaggcggcgtcagcgccgcggggatgttcggcggcagcaacggtggcggc
gcggggatgtttgatccgaggcagctgtgcgacatggagcacaaggtgaagttcggccag
ggcggcggcggcggcgacatgacgcgggacttcctcggcgtgggcggaggcggcatcgtg
cgcggtatttcgacgccgagaggagaccaccaccagagcagcagcgacatgagctcactg
gaggccgagatgaagtcggcctcgtccttcaacgggggcaggatgccatga
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