Panicum virgatum (switchgrass): 120641484
Help
Entry
120641484 CDS
T07260
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03410
Base excision repair
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120641484
03410 Base excision repair
120641484
03420 Nucleotide excision repair
120641484
03430 Mismatch repair
120641484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120641484
03036 Chromosome and associated proteins [BR:
pvir03036
]
120641484
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120641484
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120641484
DNA Replication Termination Factors
ELG1-RFC complex
120641484
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
120641484
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120641484
Check point factors
HRAD17(Rad24)-RFC complex
120641484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Mg_chelatase
AAA_16
Rad17
Viral_helicase1
RCF1-5-like_lid
AAA_5
nSTAND3
AAA_11
RuvB_N
AAA_28
AAA_19
AAA_24
AAA_assoc_2
AAA_25
AAA_30
MeaB
RNA_helicase
AAA_3
ABC_tran
DNAX_ATPase_lid
DUF6120
IstB_IS21
bpMoxR
NTPase_1
AAA_18
NPHP3_N
SLFN-g3_helicase
KTI12
DO-GTPase1
DNA_pol3_gamma3
DNA_pol3_delta_C
Motif
Other DBs
NCBI-GeneID:
120641484
NCBI-ProteinID:
XP_039773586
LinkDB
All DBs
Position
7K:43510027..43513066
Genome browser
AA seq
336 aa
AA seq
DB search
MAASSSAAAPAPADTYDIPWVEKYRPTRVADVVGNSDAVARLEVIARDGNMPNLILSGPP
GTGKTTSILALAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIV
ILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI
LGRLMIVVAAEKVPYVPDGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQP
HPLRVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLK
ETGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAP
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcctcttccgccgccgcgcctgcccccgccgacacctatgacatcccatgg
gtggagaagtaccgccccacccgcgtggcggacgtcgtcggcaactccgacgccgtcgcc
cgcctggaggtcatcgcccgcgacggcaacatgcccaacctcatcctctcgggtcctccg
gggactgggaagacgacgagcattctggcgctggcccacgagctgcttgggcccagctac
cgcgaggccgtgctcgagctcaacgcctcggacgacagggggctggatgtggtgcggaac
aagatcaagatgtttgcgcagaagaaggtcactctgcagccagggcggcacaagattgtg
atcttggatgaggctgacagcatgacatcaggagcacagcaagctctgcgaagaacaatg
gagatctattccaacaccactagatttgcacttgcgtgcaacacctcgtctaagataatc
gaacccattcaaagtcgctgtgctattgtcaggttctcaaggctctctgatcaggagatc
cttggccgcctcatgattgttgtggcggctgagaaggttccttatgtgccagatgggctt
gaagctatcatatttactgctgatggtgacatgagacaagctttgaacaacctgcaagct
acatttagtggtttccgctttgttaatcaagaaaatgtgttcaaggtatgcgatcagcca
catcccttacgtgtcaagaacatggtgaaaaatgtgcttgatggaaagtttgacgaggcc
tgctctgcactgaagcaactttatgatttgggatactctcctactgacattatcactact
ctcttccgagttgtcaagaactatgacatggctgaatatctgaagctggaaatgctcaag
gaaacaggatttgcgcatatgagaatctgcgatggtgttggatcattccttcagctttct
ggcctacttgcgaagtttgcactggtgagagaaactgcaaaagctccctga
DBGET
integrated database retrieval system