KEGG   Panicum virgatum (switchgrass): 120641484
Entry
120641484         CDS       T07260                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03030  DNA replication
pvir03410  Base excision repair
pvir03420  Nucleotide excision repair
pvir03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120641484
   03410 Base excision repair
    120641484
   03420 Nucleotide excision repair
    120641484
   03430 Mismatch repair
    120641484
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvir03032]
    120641484
   03036 Chromosome and associated proteins [BR:pvir03036]
    120641484
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120641484
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120641484
  DNA Replication Termination Factors
   ELG1-RFC complex
    120641484
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120641484
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120641484
  Check point factors
   HRAD17(Rad24)-RFC complex
    120641484
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase AAA_16 Rad17 Viral_helicase1 RCF1-5-like_lid AAA_5 nSTAND3 AAA_11 RuvB_N AAA_28 AAA_19 AAA_24 AAA_assoc_2 AAA_25 AAA_30 MeaB RNA_helicase AAA_3 ABC_tran DNAX_ATPase_lid DUF6120 IstB_IS21 bpMoxR NTPase_1 AAA_18 NPHP3_N SLFN-g3_helicase KTI12 DO-GTPase1 DNA_pol3_gamma3 DNA_pol3_delta_C
Other DBs
NCBI-GeneID: 120641484
NCBI-ProteinID: XP_039773586
LinkDB
Position
7K:43510027..43513066
AA seq 336 aa
MAASSSAAAPAPADTYDIPWVEKYRPTRVADVVGNSDAVARLEVIARDGNMPNLILSGPP
GTGKTTSILALAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIV
ILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI
LGRLMIVVAAEKVPYVPDGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQP
HPLRVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLK
ETGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAP
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggccgcctcctcttccgccgccgcgcctgcccccgccgacacctatgacatcccatgg
gtggagaagtaccgccccacccgcgtggcggacgtcgtcggcaactccgacgccgtcgcc
cgcctggaggtcatcgcccgcgacggcaacatgcccaacctcatcctctcgggtcctccg
gggactgggaagacgacgagcattctggcgctggcccacgagctgcttgggcccagctac
cgcgaggccgtgctcgagctcaacgcctcggacgacagggggctggatgtggtgcggaac
aagatcaagatgtttgcgcagaagaaggtcactctgcagccagggcggcacaagattgtg
atcttggatgaggctgacagcatgacatcaggagcacagcaagctctgcgaagaacaatg
gagatctattccaacaccactagatttgcacttgcgtgcaacacctcgtctaagataatc
gaacccattcaaagtcgctgtgctattgtcaggttctcaaggctctctgatcaggagatc
cttggccgcctcatgattgttgtggcggctgagaaggttccttatgtgccagatgggctt
gaagctatcatatttactgctgatggtgacatgagacaagctttgaacaacctgcaagct
acatttagtggtttccgctttgttaatcaagaaaatgtgttcaaggtatgcgatcagcca
catcccttacgtgtcaagaacatggtgaaaaatgtgcttgatggaaagtttgacgaggcc
tgctctgcactgaagcaactttatgatttgggatactctcctactgacattatcactact
ctcttccgagttgtcaagaactatgacatggctgaatatctgaagctggaaatgctcaag
gaaacaggatttgcgcatatgagaatctgcgatggtgttggatcattccttcagctttct
ggcctacttgcgaagtttgcactggtgagagaaactgcaaaagctccctga

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