Panicum virgatum (switchgrass): 120641713
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Entry
120641713 CDS
T07260
Name
(RefSeq) YTH domain-containing protein ECT1-like isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120641713
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120641713
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
120641713
NCBI-ProteinID:
XP_039773864
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Position
7K:46692452..46696401
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AA seq
556 aa
AA seq
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MVLSESQIVVEKNPSMSVDAKEQLVLSKDKKISTTVVHAASYLESPKSAQEESSLMGKGG
EQQFGYQPNVYASQPQALFSGGYLNHLGQWEQYPYMASAEGLNAAYPVMYGAYSLMSTLE
DNQSYFSLLYPLSSPYYQPPASPSMGYSSSATGISQFDPLHQYYLPDELYYSPTPGFHQP
FGSLDGVPMHSNGIPEFFGQGNVPLNSGMHQGSMYNSGSYTALEQGGKYGGGRSCCSASS
RFDTFNKGFKHEKGSLDFLYEQSRGPRATKTKKEVESSSVEDKNKKALLIVDPEKYNHPD
FVTEYKDAKFFVIKSYTEDHVHKSIKYNVWASTARGNRKLNAAYREAKDKEEYCPIFLFF
SVNGSGQFCGVAEMIGPVDFDKSVDYWQNDKWSGQFPVKWHIVKDVPNNLVRHIILENNE
DKRVTNSRDTQEVKLEQGVQMLAIFKNHNAKTTILEDFDFYEQQEKAMLDNRQQLKVQCA
DPKAQKLVVASVAVGIVTQISDSFAQAVQLEETKDKEISLKIEDTTSAEKASAAPVKTEE
TTPKTAESGNLLKGSG
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggtgctatcggaatcacagattgtagtcgagaaaaatccttccatgagtgtggatgca
aaagagcagcttgttttgagcaaagataaaaaaatatctactactgtggtgcatgctgca
agctacttagaatcaccaaaaagtgcccaagaggagtctagccttatgggtaaaggtgga
gaacaacagttcggctaccagcccaatgtgtatgcttctcagccacaagcactcttttct
ggaggatatttaaaccatttgggtcaatgggaacaatatccatacatggcgagtgcggag
ggtcttaatgctgcataccctgtgatgtacggagcttattcccttatgtcaacccttgaa
gacaaccagtcatatttctctttgctctaccccttgtcaagtccttactaccagccacct
gcttctccaagcatgggatattcaagttccgctactggaatatcacagtttgatcctttg
caccagtactaccttcctgatgagctttactactcaccgactcctggattccatcagcct
tttggttctttggatggagttccaatgcattctaatggtattcctgaattttttgggcaa
ggaaacgtacccctgaattctggaatgcaccagggttccatgtataactctggatcatac
actgcattagaacaaggtggcaaatatggaggcggtagatcatgttgcagtgctagtagc
agatttgacaccttcaacaaaggcttcaagcatgagaagggctctcttgactttctgtac
gagcaaagccgtggcccaagagccaccaaaacaaagaaagaagtggagagctcttcagtt
gaggataaaaataaaaaggcattgttaatagttgatcctgagaagtacaaccaccctgat
ttcgtcaccgagtacaaggatgccaaattctttgtaataaagtcctacactgaagatcat
gttcacaaaagcataaagtataatgtttgggccagcactgcccgagggaacagaaagcta
aatgctgcttatcgtgaggcgaaagacaaagaagagtattgtcctattttcttgtttttc
tcggttaatggcagtggtcagttctgcggtgtagctgagatgattggacctgttgacttt
gacaagagcgtcgattactggcagaatgacaaatggagtggccagttccctgtgaaatgg
cacattgttaaggatgtcccaaacaaccttgttcggcacatcatcctggagaacaatgag
gacaagcgtgtgacaaacagcagggacacacaagaggtgaaactagagcaaggtgtccaa
atgttggccatcttcaagaaccacaatgccaagacaaccatccttgaggattttgacttc
tatgagcaacaagagaaggctatgttggataataggcagcagctgaaggtacagtgtgct
gatcccaaggcccagaagctggtggtggccagtgtagcagtaggcatcgtgactcaaatc
tcagactcctttgcacaggctgtccagctagaagaaaccaaggacaaagaaatcagtctg
aagattgaagataccacatctgctgagaaggcatctgctgctcctgtgaagactgaagaa
accacgccaaaaacggcagaatctggtaaccttttgaagggaagcggttga
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