Panicum virgatum (switchgrass): 120641884
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Entry
120641884 CDS
T07260
Name
(RefSeq) organic cation/carnitine transporter 4-like
KO
K08202
MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pvir02000
]
120641884
Transporters [BR:
pvir02000
]
Solute carrier family (SLC)
SLC22: Organic cation/anion/zwitterion transporter
120641884
Major facilitator superfamily (MFS)
Organic acid transporters
Organic cation transporter (OCT) family [TC:
2.A.1.19
]
120641884
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sugar_tr
MFS_1
TMEM234
DUF1304
Motif
Other DBs
NCBI-GeneID:
120641884
NCBI-ProteinID:
XP_039774129
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All DBs
Position
7K:48471516..48477226
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AA seq
516 aa
AA seq
DB search
MSTEPLLSGGGAKAKGRRRVGIDEALSAHAGEFGRWQLRHFVLVSAAWALEALHTMVIIF
ADREPAMACAAGAGAGCGDRCAGAAAGWEWADGAASSTVAEWGLVCGERYKVGLAQAVFF
AGCMIGAGVFGHLSDSFLGRKGSLQVVCVLNAAFGLLTALAPNYWAYAALRLLTGFSTGS
VGVLAFVLATEPVGPSRRGAAGMSTFYFFSGGIAALAGLAALFPRSWRALYVVTSLPSLA
FAAAVVPFVSESPRWYLVRRRADDAMRVVRAIAAANGRTVPDDVSLKLDDEDEEGKSVGV
DGSADSSSSSSGSIVDVLRSRTTRVRLVLSVLINLLSSVVYYGLSLNVVNLKTNLYVSVV
ANSFAEMPAYLLTALLLDRFGRKPLAIGTMLLAGVFCTAGSLIAGAGIMRVVRMACGVVG
IFGVAATYNLLFIYTAELFPTVVRNAALGCTAQAAQMGAIVAPLVVVLGERLPFAVFGAS
GIAGGLLIFYLPETMNKPLYDTMAGLEEGEKTTLLG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggagcccctcctctccggcggcggcgcgaaggcgaaggggcggcggcgcgtg
ggcatcgacgaggcgctgtcggcgcacgcgggggagttcgggcggtggcagctgcggcac
ttcgtgctggtgtcggcggcgtgggcgctggaggcgctgcacaccatggtgatcatcttc
gcggaccgggagcccgccatggcctgcgccgccggcgctggggccggctgcggggaccgg
tgcgcgggcgccgcggccgggtgggagtgggccgacggcgccgcgtcgtcgaccgtcgcc
gagtgggggctcgtctgcggcgagcggtacaaggtcggcctcgcccaggccgtcttcttc
gccggctgcatgatcggcgccggcgtgttcgggcacctgtcggactcgttcctgggccgg
aaggggtcgctgcaggtggtgtgcgtcctcaacgccgccttcggcctgctcaccgcgctg
gcgcccaactactgggcctacgccgcgctgcgcctcctcacgggcttcagcaccggcagc
gtcggcgtcctcgccttcgtcctcgccaccgagcccgtcgggccctcccgccgcggcgcc
gcgggcatgtccaccttctacttcttctccggcggcatcgccgcgctcgccggcctcgcc
gcgctcttcccgcgctcctggcgggcgctctacgtcgtcacctcgctcccgtcgctcgcc
ttcgccgccgccgtcgtgccgttcgtctccgagtccccgcggtggtacctcgtgcgccgc
cgggccgacgacgccatgcgcgtcgtccgcgccatcgcggccgccaacggcaggaccgtc
cccgacgacgtctccctcaaactcgacgacgaggacgaggaagggaagagcgtcggcgtc
gacggctcggcggactcctcctcctcctcgtccggctccatcgtcgacgtgctccggtcg
cggaccacgcgggtccgcctcgtgctctcggtgctcatcaacctcctctcgtcggtggtg
tactacggcctcagcctcaacgtcgtcaacctcaagaccaacctctacgtcagcgtcgtc
gccaactcgttcgccgagatgcccgcctacctgctcaccgcgctgctcctcgaccgtttc
gggcggaagccgctcgccatcggcaccatgctgcttgccggcgtcttctgcaccgccggg
agcctcatcgccggcgcaggcatcatgagggtggtgcggatggcgtgcggcgtggtgggc
atcttcggcgtggcggcgacttacaacctgctgttcatctacacggcggagctgttcccg
acggtggtgcggaacgcggcgctggggtgcacggcgcaggcggcgcagatgggcgccatc
gtggcgccgctggtggtggtgctcggggagaggctgccgttcgcggtgttcggcgcgtcg
ggcatcgccggcgggctgctgatcttctacctgccggagaccatgaacaagcccctgtac
gacaccatggccgggctggaggaaggggagaagacgacccttctggggtga
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