Panicum virgatum (switchgrass): 120641907
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Entry
120641907 CDS
T07260
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1
KO
K15047
heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120641907
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120641907
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
120641907
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120641907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
KTI12
Zeta_toxin
AAA_17
NB-ARC
Motif
Other DBs
NCBI-GeneID:
120641907
NCBI-ProteinID:
XP_039774154
LinkDB
All DBs
Position
7K:complement(48877308..48880569)
Genome browser
AA seq
704 aa
AA seq
DB search
MASPDDEAAQPPPKRSRRDPEAEKDAAQPPPPPPRVELNPADCDLDFDVGGGGLKGSALH
EGGFAYCWSGARATVGARGGGRYCFGCRIVAEQPVEMDLTAPEERHLCRIGVSRGDDPVG
ALGESDHSFGFGGTGKFSHQRRFANYGVRFGVGDTVVCAVDLDSKPMASIGFARNGQWLG
IAKHFDAGEKGLGLVDAAVRPMQWESALFPHVLLKNVVVEMQFSREDGLEPVDGYEPWAS
AFADGNAVFGPLFEQSECEVMMMVGLPASGKSTWAEKWVKEHPEKRFILLGTNLALEQMK
VPGLLRKNNYGERFDRLMDCATWIFNKLLTRAANTRRNFIIDQTNVYKNARIRKLRPFAN
YHKTAVVVFPPPSELKSRAAKRFDEMGKEVPAEAVNEMTANFVLPLSRDMPDSKEPFNKV
IFTELSRDEAQRNLLEMQRLLPKTGTQSYGNSSNQNASSTYAVTAAPVDTRPRSSMANIH
PPMANSYGSYSGTVPGSAATFSTGVHTVGITTQQQALSSVQRFQSPTGNQHEFHSGYPSD
PNQYRMPSSYPNNPNQYQLHGSYQSTPLPGYGQSTYGSHRNPSPYNPNPYNPEMHQCIQG
PMTNRNLYQAPGSAKAYGVPGYAAANLIGRPHQVPPPNLPAYSSQPVAQWVPNQGSSSSW
SSDSYRPYGQQSDVHYPPCAAPATPPTPWLPHCSAPNHMNQWRS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccggacgacgaggccgcgcagccaccgccgaagcgttcccggcgcgacccc
gaagcggagaaggacgccgcgcagccgcctccgcctccgccgcgcgtggagctcaacccg
gcggactgcgatctcgacttcgatgtcggcgggggcggcctcaaggggagcgcgctgcac
gagggcgggttcgcctactgctggtcgggcgcgcgcgcgacggtgggcgccaggggcggc
gggaggtactgcttcgggtgcagaatcgtcgccgagcagcccgtggagatggacctcacg
gcccccgaggagcgccacctctgccgcattggcgtctccaggggcgacgatcccgtgggg
gcgctcggggagtccgaccacagcttcgggttcgggggcacggggaagttttcccaccag
cggaggttcgccaactacggcgtcaggttcggggtcggggacacggtcgtctgcgccgtg
gacctcgattcgaagcccatggcgtcgatcgggttcgcgaggaacggccagtggcttggt
atcgcgaagcatttcgatgccggtgagaaggggcttggcttggttgacgcagctgtgagg
ccgatgcaatgggaatcagcgctctttccccatgtcctgctgaagaatgttgtcgtggag
atgcaatttagcagggaggatgggctggagccagttgatggttatgagccctgggcctcg
gcttttgctgatgggaatgctgtatttggacctctgtttgaacagagtgaatgtgaggtc
atgatgatggttggtctcccggcttcaggcaagtcgacatgggcagagaagtgggtcaag
gagcatccggagaaacgttttatccttctcgggactaaccttgcattggagcaaatgaag
gtgccaggattgttgcgtaagaataactatggtgagcgttttgatcggttgatggactgc
gctacatggattttcaacaaattgctgaccagggctgcaaacacccgtcgcaactttatc
attgatcaaacaaatgtttacaagaatgctcgtattcgcaagctgaggccatttgccaac
taccataagactgctgtggtcgtattcccaccgccaagtgaactgaaatccagggcagca
aagcgattcgatgagatgggaaaggaagtgccagctgaagcagttaacgaaatgacagcc
aattttgtcttgccgctctcaagggatatgcctgattcgaaggagccttttaacaaggta
atttttacagagctttctagggatgaggcccagagaaacctacttgagatgcaacgactg
ctgccaaaaaccgggacccaaagctatggcaattccagtaaccaaaatgctagctcgacg
tatgcagtgactgctgctccagttgatactaggccaaggtcatccatggcaaacattcac
cctccaatggccaattcatatggaagttatagtggcacggtacctggaagtgctgctact
ttcagcacaggtgtgcatactgtgggtattacaacacagcaacaggcactgtctagtgtt
cagaggtttcagagtccaacaggaaaccaacatgaatttcattcaggctacccaagtgat
ccgaaccaatatcggatgccctcaagctatccgaataacccaaaccagtatcagttacat
ggaagctaccaaagtaccccacttcctggttatggacagagtacatatggatcccatagg
aacccgagcccatacaatcctaatccttataaccctgagatgcaccaatgcattcagggt
ccaatgactaataggaacctctaccaggcacctgggtcagccaaagcctatggggtccct
ggctatgcagctgcaaatctgattgggaggccacatcaggtgccaccaccaaatcttcca
gcatatagttcacaaccagttgctcagtgggtgccaaatcaaggtagttcttcctcatgg
agttctgacagctacaggccctatggacaacagtctgatgtgcactacccgccgtgtgct
gctccagcaacacctccgactccctggcttcctcactgttccgccccaaaccacatgaat
caatggcggagttag
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