Panicum virgatum (switchgrass): 120641912
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Entry
120641912 CDS
T07260
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03018
RNA degradation
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120641912
09123 Folding, sorting and degradation
03018 RNA degradation
120641912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120641912
03041 Spliceosome [BR:
pvir03041
]
120641912
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120641912
mRNA degradation factors
5'-3' decay
Lsm complex
120641912
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120641912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
120641912
NCBI-ProteinID:
XP_039774160
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Position
7K:complement(48869437..48871726)
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AA seq
98 aa
AA seq
DB search
MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcgcaaggagactgcactcgacctggcgaagttcgtcgacaagggcgtccag
gtgaagctcaccggcggccggcaagtgacaggaactttaaagggatacgaccagctactc
aacttagtgctagatgaagcagtggagtccgaaagagagcaagatgacccattgaagcta
tctgggaaaaccagacagcttggcctcattgtgtgcaggggcacggcagtcatgctggtc
tcaccaactgatggaactgatgagatcgcgaaccctttccttgccgatggggcataa
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