Panicum virgatum (switchgrass): 120641919
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Entry
120641919 CDS
T07260
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 1A-like
KO
K15559
regulator of Ty1 transposition protein 103
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120641919
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120641919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CTK3
Drf_FH3
FlgT_M
RPW8
Pol_alpha_B_N
TEX13
Motif
Other DBs
NCBI-GeneID:
120641919
NCBI-ProteinID:
XP_039774167
LinkDB
All DBs
Position
7K:complement(48950464..48953448)
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AA seq
513 aa
AA seq
DB search
MNSAFSEDILADKLAKLNNTQQCIETLSHWCIYHRKNAEQIVQTWDKQFHSSTKEQKVPF
LYLANDILQNSKRNGTEFVEEFWKVLPGALKDVTENGDDRGKKVASRLVDIWQERRVFGS
RAGGIMDVMFGAAPLPVLDMTKKRSHSSAIKIVKRDSRSVKLRLGVGGTAEKIVSALHTV
HSEQADEDADLENCKTSMRHVGKLEKDVDSACSKFEDPRREVLCAELKDEEANMKKCIEK
LKVVEANRAAVVSELKEALQEQESELEKVRTQLQLAEAMVHEASNMQRRLKNEPTIPLPN
AASSAEPGKPLPNGQAKEQQKTAAAILADKIAAASNSQQILQSALSKFAAEEAKNSSETR
SDKRQKTDQPLQVPSVTNAAAFVPMPQVVATTAQQQPQAMLVQQAPMQSQGPAPQPQYNI
YQAPSQHFVQQPGGVMMGMPYNMSTMTPPPPPPPQTMNLGRPSPTAPQQQMAIMPQTSLG
PQMQFTLQQPGVPPFRLMQPPPPGMQYFHPQSQ
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcgcgttcagcgaggacatactcgctgacaagctcgccaagctcaacaacact
cagcaatgcatcgagacgctgtcgcattggtgcatttatcatagaaagaatgcagagcaa
atcgtccagacttgggacaagcaattccacagctctaccaaggagcagaaggtccctttc
ctttatcttgctaatgacatcttacagaacagcaagcgcaatgggacagagtttgtagaa
gaattttggaaggtactccctggagcgcttaaagatgtaactgagaatggtgatgatcgt
ggtaagaaggtggcatctaggctggttgacatatggcaagaacggagagtttttggttca
cgtgctgggggcattatggatgtgatgtttggagctgcccctcttcctgttttagatatg
acaaaaaagcgctctcacagttcggccataaagattgttaaaagagattcacgttctgta
aaacttagactaggtgtaggaggaactgcagagaaaattgtatccgcattgcatactgtt
cacagcgaacaagcagatgaagatgctgacctggaaaactgcaagacttctatgcgtcat
gttggaaagttggagaaggatgttgacagcgcatgcagcaaatttgaagatcctcgccgt
gaggttctttgtgcagaattaaaagatgaggaggctaacatgaaaaaatgcattgaaaag
ctgaaagtagttgaagcaaatagagcagctgttgtgtctgaattgaaggaggcgttgcag
gagcaggaatccgaattggagaaagtccgtactcagttacagctggctgaagcaatggta
catgaagcgtcaaacatgcaacggagactcaagaatgagccaaccattccactgcccaat
gcagcatcatcagcagagccaggaaagccgcttcccaatgggcaagcaaaggagcagcag
aagacagctgctgctatcctcgcggataagattgcagcagcatcaaactctcagcagata
ctgcagtctgcactctccaagtttgctgctgaggaagcgaagaattcatctgaaacacgc
tcagataagaggcaaaagactgatcaacccttgcaggtaccaagtgtcacgaatgctgct
gctttcgttcccatgccacaagtggttgccacaacagctcagcagcagccccaggcaatg
ctagtacagcaagcacctatgcagagccaaggccctgcaccccagccccagtacaatatc
taccaggctccttcccagcatttcgtccagcaacctggaggcgtgatgatgggcatgcct
tacaacatgagcaccatgaccccacccccgcctccaccgccacagacgatgaacctagga
aggccctcacccacagcaccccagcagcaaatggctatcatgccgcagacgagcctgggg
ccgcagatgcagttcacccttcagcagcccggggtgccgcctttcaggctgatgcagccg
ccccctcctggaatgcaatacttccacccccaatctcagtga
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