Panicum virgatum (switchgrass): 120641923
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Entry
120641923 CDS
T07260
Name
(RefSeq) DNA polymerase I A, chloroplastic-like
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03410
Base excision repair
pvir03420
Nucleotide excision repair
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120641923
03410 Base excision repair
120641923
03420 Nucleotide excision repair
120641923
03440 Homologous recombination
120641923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120641923
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120641923
Enzymes [BR:
pvir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120641923
DNA replication proteins [BR:
pvir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
120641923
DNA repair and recombination proteins [BR:
pvir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
120641923
NER (nucleotide excision repair)
GGR (global genome repair) factors
120641923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_A_exo1
DUF2268
Motif
Other DBs
NCBI-GeneID:
120641923
NCBI-ProteinID:
XP_039774180
LinkDB
All DBs
Position
7K:48981548..48988819
Genome browser
AA seq
1031 aa
AA seq
DB search
MAMAGTAPAPAPALLRRCPCSAPPWAPSPFRPRRRGRSTMSPFTGGRRQEYSHSSGAGIQ
DNKPLKFGVCVNFNVQSSGAQEWAAESKRLSAIRTSNGTYKGSSHLGPAILHHEHLEDFK
SSKQSSAHSLRQIMAPNSLANRHANMEPAKHHMINRAATAVSALASVVKDDTKPVNRHSE
SEVEAHWPNGSKFHASLPKISEIETSLPFDDKATESDPKDENECSPKETVQPSPAKAPLS
KESKDARKALATIYEKVLVVDDVKSARRVVQLLTTKYRNFIHACDTEVANIDVKQETPVG
HGKVTCFSIYSGTSGAEADFGNGKTCIWVDVLDGGRDVLMEFSPFFEDSSIRKVWHNYSF
DSHVIENYGIKVSGFHADTMHLARLWDSSRRTDGGYSLEGLTNDHRVLGVVPKEVQKIGK
RSMKTIFGRKKIKKDGSEGKITAIEPVEILQREDRELWICYSSLDSMSTLRLYESLKIKL
ERMPWTFDGVPRGSMYDFYEEYWRPFGAILVKMETAGMLVDRAYLSEIEKVAVAQRKLVA
EKFRKWASKYCPDAKYMNVNSDIQIRQLFFGGIENRFKPGEFLPKSRAIKVPNDETAVAE
GKKIPKYRTIELFSIVEDLQTEIFTASGWPSVSGDALRNLAGKVPSDLVYTTDDVSNDEC
GSDSEISDCDLEDTSSYGTAYEAFGGGKKGKEACHAIAALCEICSIDSLISNFILPLQGN
HISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNTLIVADYG
QLELRILAHLAGCKSMLDAFKAGGDFHSRTAMNMYQHIREAVEEEKVILEWHPQPGQEKP
PVPLLKDAFGAERRKAKMLNFSIAYGKTAHGLARDWKVSVKEAKDTLKLWYSDRKEVKAW
QMKQKALAQERCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCAMH
EIDRNTRLKELGWTLLLQVHDEVILEGPAESAEQAKSIVVECMSKPFYGTNILKVDLAVD
AKCAQNWYAAK
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggccgggacggcgccggcgccggcgccggcgctgctccggcggtgcccgtgc
tcggcgcctccctgggcgccctcgcccttccgcccccgccgccgcggccgctcgacgatg
tcgcccttcaccggtggcagaaggcaggagtactctcatagttcaggtgctggaattcaa
gacaacaaacctcttaagtttggagtatgtgtcaactttaacgtgcaaagtagtggggcg
caagaatgggctgctgagagcaagaggttatctgccatcagaaccagcaacggtacctac
aaaggttccagtcacctagggccagctattcttcatcatgaacaccttgaagatttcaag
agctccaagcagtcttcagctcacagtttaagacaaataatggcgccgaattcacttgca
aataggcatgccaatatggaacctgcaaagcatcacatgattaatcgtgctgcaactgct
gtgtcagcactggccagtgttgttaaagatgacaccaaaccagttaacaggcatagtgaa
tccgaagtggaggctcattggccaaatggttccaagtttcatgcttctcttccgaaaatt
tctgaaattgaaacaagcttgccatttgatgacaaggctacagaaagcgatcctaaagat
gaaaatgaatgctcacccaaggagacagtacaaccttctcccgctaaagcacccttgtcc
aaggagtctaaagatgcacggaaggcacttgctaccatctatgaaaaagttctggtggtt
gatgatgtcaagtcagctaggagagttgttcagttgcttactacgaagtacagaaatttt
attcatgcatgtgatacagaggtagctaatattgatgttaaacaagagacaccagttggc
catggaaaggtcacatgctttagcatctactctggcacttctggtgctgaagctgatttt
ggaaatggcaagacatgcatttgggtggatgtgctggatggtggacgggatgtcctcatg
gagttttccccattttttgaagattcatcaattaggaaggtttggcacaattatagtttc
gatagtcatgtcatagagaactatggaattaaagtttctggatttcatgctgatacaatg
catctcgcacgactttgggattcgtcaagaagaacggatgggggatattctcttgaggga
cttacaaatgatcacagggtcttgggtgttgtcccaaaggaagtgcaaaagatcgggaag
cggtcaatgaaaaccatctttggtaggaaaaagataaaaaaagatggatcagaaggtaaa
attactgcaattgagcctgttgaaattttacaaagagaagatagagaactgtggatctgt
tattcttcactagattccatgagtacgttgaggctttatgaaagcttgaaaatcaagctt
gaaaggatgccatggacttttgatggtgtccccagaggttcaatgtacgatttctatgag
gagtattggcgtccgtttggtgctattcttgtcaaaatggaaacagctggaatgcttgtc
gaccgtgcttacctttcagagattgaaaaagttgctgttgcacagcgcaaattagttgct
gaaaaatttcggaagtgggcatctaagtattgccctgatgcaaaatacatgaatgttaat
agtgatattcagattcgacaactcttctttggtggtatagagaacagattcaaacctggt
gaatttttgccgaagagtagagctattaaagtgcctaatgatgaaactgcagttgcagaa
ggcaagaagattccaaagtatcgcacaattgaacttttcagtattgtcgaagacctccaa
actgaaatattcactgcaagtggctggccttcagttagtggggatgcattgagaaatttg
gctgggaaagttccatcggatcttgtttacacaacagatgatgtaagtaatgatgaatgt
ggtagtgattctgaaatttctgattgtgacctagaagacacctcctcttatggaactgca
tatgaagcatttgggggaggcaagaaaggaaaagaagcatgtcatgccattgcagctcta
tgtgagatctgttctattgactcgttgatatccaacttcattcttcctttacagggaaat
catatatcatgtaaggaggggcggatccactgttctttaaatatcaacacagaaacaggg
cgtttatcggcgagaacaccaaatttgcagaaccaacctgcacttgaaaaggatcggtat
aaaattcgccaagcttttgtcgcagctccagggaacactcttattgttgctgattatggt
cagctggagctccggatattggcgcatcttgctggttgtaaaagcatgttagatgctttc
aaagctggcggtgacttccattccaggactgccatgaacatgtaccagcatattcgcgag
gctgttgaagaagagaaagtaattcttgagtggcatcctcaacctggtcaagagaaacct
cctgtgccactgttgaaggatgcttttggtgctgagaggaggaaagctaaaatgctaaat
ttttccattgcatatggaaaaacagcccatggacttgctcgagattggaaggtttctgtt
aaggaagcaaaggacacactgaaactctggtatagtgatcgaaaggaggttaaggcttgg
caaatgaagcagaaagcgctagcacaggagaggtgtgaagtttatactttgcttgggcga
tcacgccgttttccaaacatggctcatgcaacttctggccaaaggggtcacattgagcgt
gctgctatcaatgctcctgtacagggcagtgcagcagatgttgctatgtgtgcaatgcat
gagatagacaggaatactcgtctgaaggaacttggttggacgctactcttgcaggtacat
gatgaagtgatactggaagggcctgccgagtccgctgaacaggccaagtccatagtagtc
gagtgcatgtctaagcccttctatggcaccaacatcctgaaggtcgacctggctgttgat
gccaaatgtgcgcagaattggtatgcagctaagtag
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