KEGG   Panicum virgatum (switchgrass): 120641938
Entry
120641938         CDS       T07260                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120641938
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120641938
Enzymes [BR:pvir01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     120641938
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     120641938
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 120641938
NCBI-ProteinID: XP_039774206
LinkDB
Position
7K:49087148..49099112
AA seq 1231 aa
MEELQKDGGQSPNCSDSELELMVVDEDGAEKFHNMDEGSNDSPIHVDEGQSSMDVDVKGK
TSLADESCDDGANGKSSSEPCSNVPIDMSVESLEKFCKEASRSFFDEIGLISHQINSYNE
FVSHGLQELFNSLGEIIVDPGYDPSKKVSGAWKHAIIKFGRVKLEKPVFLSGNDEVDIDL
KPRHARLQNMTYASKIKVEVTIQVYSLEKSDKSKTGTDGFVQRRDFMNETHSIYIGRLPV
MVKSDLCLLHKESDCLFDVGGYFLVKGMEKVFIAQEQRCLSRLWIVDRPCWTVSFMSEMK
RRRIYIKLVESTKSEDFSRSKIISISFLYATMPIWLMFFALGISSDKEAFDVIDMHDCDA
SVINTISATIKESDELCEGFRKSDKARQYVDELVKKSRFPPAESFDDYINKFLFPDISGY
RNKALFLGYMVKCLLMAFIGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERRMVKA
IQRDLNSDRELQDLAHYIDASIVTNGLNRAFATGSWCHPYKRTERCSGIVATLRRTNPLQ
MMSDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVV
QPLIESFISCGMSKLNEIPTENIQRMDKIFLNGNWVGSCTDSASFVLRLRCMRRSSLIDP
QVEIKRDKHQKEVRVFSDAGRLLRPLLVVENLNKIRKPKSRRYSFQELMQQEIIEFIGVE
EEEDIQCAWGIRHLFGSKGEISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKH
SQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVVADCLGRSDCTIGRRDDFSRPEYFNG
QNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKDGTKRLKKEKIDFG
KMESKRGCVDNLDDDGLPYVGASLQTNDIIIGKVSESGEDHSIKLKHTEKGMVQKVLLSA
NDEGKNFAVVTLRQVRTPCLGDKFSSMHGQKGVIGFLESQENFPFTHQGIVPDIVINPHA
FPTRQTPGQLLEAALGKGIALGGTMRYATPFTTASVDVIAEQLHKFGFSKWGAESVINGR
TGERMQSLVFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERD
CLLAHGAAANLHERLFMLSDFSQLHICQTCERVANVIMRCVPGGKKIRGPYCGFCKSSEN
IVRINVPYGAKLLYQELFSMGICLKFETEVC
NT seq 3696 nt   +upstreamnt  +downstreamnt
atggaagagctacagaaggatggtgggcaatcaccaaactgctctgattctgagctagaa
cttatggtagtggatgaagatggagcggagaagttccataacatggatgagggaagcaat
gattctcctatacatgttgatgaaggacagtcctctatggatgtggatgtgaagggaaaa
acatcccttgctgatgaatcctgtgatgatggtgctaatggaaagtcttcttccgagcca
tgctcaaatgttccaatcgacatgagtgtagaaagcctagagaagttttgcaaagaagca
tcaaggtctttctttgatgaaattggtctgattagccatcagataaattcctacaatgag
tttgtctcgcatgggctccaggagctttttaattcactgggcgaaatcattgttgatcct
ggttatgatccttcaaagaaagtgtcaggtgcctggaagcatgccatcatcaagtttggg
agagtgaagcttgaaaagcctgtattcttgtctggcaatgacgaagttgatattgatttg
aaaccgaggcatgctcgcctccagaatatgacatatgcttccaaaattaaagtagaagtg
acgattcaggtttattctttagagaaaagtgacaagtctaaaacagggactgacggtttt
gttcaaagaagggactttatgaatgaaactcattcgatatatattggtcgccttccggtt
atggtgaaatcagatttgtgcttgcttcacaaggaaagtgactgcctgttcgatgtcggc
ggatactttttggttaagggaatggagaaggtattcattgctcaagagcaaagatgcctg
agcaggctttggattgttgatcgaccttgctggactgtctcttttatgtctgaaatgaag
cgaaggcgcatatatattaaactagtggaatctacaaagagcgaagatttcagcaggagc
aaaatcatttccatttcctttctatatgcgacaatgccaatttggttgatgttttttgca
ctaggaatatcatcagacaaggaagcttttgatgtgatagatatgcatgattgtgatgct
tctgttatcaacacaatatctgcaactatcaaagaatctgatgaactgtgtgaaggtttt
cgtaaatcagataaagcacgtcaatatgttgacgagttggtaaaaaaatcaagatttcct
ccagcagagtcctttgatgactatattaataagtttctctttcctgatattagtggatat
aggaacaaagcacttttcttaggttacatggtgaaatgcctgctaatggcttttattgga
aagcgcaaatgtgacaataaggatgatttccggaataagaggttggacctggctggtgaa
ttgcttggaagggaacttcgggcacatattaggcatgcagagagacgcatggttaaggct
attcaaagggatttgaatagtgaccgcgagttacaagatcttgcacattatattgatgca
tcgattgtcactaatggtctaaatcgtgcctttgccactggttcttggtgtcatccctac
aaaagaactgaacggtgctcaggaattgttgcgactctaaggagaacaaatcctcttcaa
atgatgtctgacttgagaaaaacccgtcagcgggttgcttatgctgggaaagctggtgac
gctagatatccgaatccatcctactggggaaagctgtgttttatgtccactcctgatggt
gaaaactgtggacttgtgaaaaatctagctgttactgctattgttagctctagagtggtg
cagcctttgattgagagtttcatttcttgtggaatgagtaagctgaatgaaattcctact
gagaacattcaaagaatggataagatttttctgaatggcaattgggtaggatcttgtact
gattcagcttcatttgtattgcgattaaggtgcatgagacgcagcagtctgatcgatcca
caggttgaaatcaaaagggacaagcaccaaaaggaagttcgtgtgttttctgatgcaggg
cgacttctcagaccccttcttgttgttgaaaatctcaataaaatcagaaaaccaaagagc
cgccgatactctttccaggaattaatgcaacaagaaataattgagttcattggtgttgag
gaggaggaggatatacaatgtgcctggggaatcagacatttgtttgggagtaaaggagag
atatctagttatactcactgtgagctggatccttcttttctgctgggactaagttgtggt
atcattccttttgcaaaccacaattttgctcggagggtactataccaatctgaaaaacac
tcacagcaagctattgggtactccacgacaaacccacacatcagagttgatactctttct
catcaactatattatcctcagaggcctcttttcaaaacagttgtagctgactgtcttggc
cgatcagattgtactattggaagaagagatgacttttctagaccagaatatttcaacggt
caaaatgcgattgtagcagtcaatgttcatcagggatttaaccaagaggattcgctggtt
atgaatagagcttctcttgaacgtggtatgtttcggactgagcacctcaggagctataag
gcagatgttgaaaacaaagatggaaccaaacgactgaagaaggaaaagatagactttgga
aaaatggaaagcaaaagagggtgtgttgacaatcttgatgatgatggcttaccttacgtt
ggtgcaagtcttcagaccaatgacattattattgggaaagtttcggaatctggagaagac
cacagtattaagctgaagcatactgaaaagggaatggttcagaaagtattgctttccgca
aatgacgaagggaagaattttgctgttgttactttaagacaggttcgaacaccgtgcctt
ggagataagttttctagcatgcatggccagaaaggtgttattggctttctagaatctcag
gagaacttcccatttactcaccaaggaatagtccctgatattgtgataaatccgcatgcc
ttcccaacacgtcaaactcccggccaattgcttgaagctgctttggggaagggaattgcc
ctcggaggtacaatgagatatgctacaccattcaccacagcatcagttgatgttatcgca
gagcagttgcacaagtttggattttcaaaatggggagccgagagcgttataaatggccga
actggtgaaaggatgcagtccttggtattcatgggccctacattttaccaaaggctgatt
cacatgtccgaagataaggtgaagtttcgcaacactggaccagtgcaccccctcacaagg
cagcctgtcgctgacaggaaaaggtttggtggagttaagtttggagaaatggagcgtgat
tgcctcctcgcccatggagcagctgccaacctgcatgagcggctgttcatgcttagtgat
ttctcccagttgcacatctgccagacatgtgagcgggtggctaatgttatcatgaggtgt
gtcccaggagggaaaaagatcaggggcccgtactgcggcttttgcaagtcttccgagaac
atagtgaggatcaatgtgccctatggtgcaaagcttctctaccaggaactcttcagcatg
gggatctgcctcaagttcgagacagaagtctgctag

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